Variant report

Variant	rs373271559
Chromosome Location	chr11:71294000-71294001
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:71293915-71294210	HepG2	liver:	n/a	n/a
2	HEY1	chr11:71293697-71294153	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71293996-71294046	K562	blood:	n/a
2	chr11:71293996-71294046	Jurkat	blood:	n/a
3	chr11:71293996-71294046	HEEpiC	esophagus:	n/a
4	chr11:71293996-71294046	NHBE	bronchial:	n/a
5	chr11:71293996-71294046	AG04449	skin:	fetal
6	chr11:71293996-71294046	AoSMC	blood vessel:	n/a
7	chr11:71293996-71294046	GM06990	blood:	n/a
8	chr11:71293996-71294046	SAEC	small airway:	n/a
9	chr11:71293996-71294046	HRPEpiC	eye:	n/a
10	chr11:71293996-71294046	HCT-116	colon:	n/a
11	chr11:71293996-71294046	HL-60	blood:	n/a
12	chr11:71293996-71294046	IMR90	lung:	fetal
13	chr11:71293996-71294046	H1-hESC	embryonic stem cell:	embryo
14	chr11:71293996-71294046	ECC-1	luminal epithelium:	n/a
15	chr11:71293996-71294046	GM12891	blood:	n/a
16	chr11:71293996-71294046	HUVEC	blood vessel:	n/a
17	chr11:71293996-71294046	HEK293	kidney:	embryo
18	chr11:71293996-71294046	MCF-7	breast:	n/a
19	chr11:71293996-71294046	SK-N-SH_RA	brain:	n/a
20	chr11:71293996-71294046	LNCaP	prostate:	n/a
21	chr11:71293996-71294046	HNPCEpiC	eye:	n/a
22	chr11:71293996-71294046	NB4	blood:	n/a
23	chr11:71293996-71294046	A549	lung:	n/a
24	chr11:71293996-71294046	GM12892	blood:	n/a
25	chr11:71293996-71294046	T-47D	breast:	n/a
26	chr11:71293996-71294046	PrEC	prostate:	n/a
27	chr11:71293996-71294046	SK-N-SH	brain:	n/a
28	chr11:71293996-71294046	AG09309	skin:	n/a
29	chr11:71293996-71294046	HRE	kidney:	n/a
30	chr11:71293996-71294046	SKMC	muscle:	n/a
31	chr11:71293996-71294046	AG04450	lung:	fetal
32	chr11:71293996-71294046	AG10803	skin:	n/a
33	chr11:71293996-71294046	HRCEpiC	kidney:	n/a
34	chr11:71293996-71294046	Caco-2	colon:	n/a
35	chr11:71293996-71294046	HCF	heart:	n/a
36	chr11:71293996-71294046	ProgFib	skin:	n/a
37	chr11:71293996-71294046	PFSK-1	brain:	n/a
38	chr11:71293996-71294046	GM12878	blood:	n/a
39	chr11:71293996-71294046	NT2-D1	testis:	n/a
40	chr11:71293996-71294046	NH-A	brain:	n/a
41	chr11:71293996-71294046	GM19239	blood:	n/a
42	chr11:71293996-71294046	Hela-S3	cervix:	n/a
43	chr11:71293996-71294046	HCPEpiC	choroid plexus:	n/a
44	chr11:71293996-71294046	BE2_C	brain:	n/a
45	chr11:71293996-71294046	HAEpiC	amniotic membrane:	n/a
46	chr11:71293996-71294046	HPAEpiC	pulmonary alveolar:	n/a
47	chr11:71293996-71294046	RPTEC	kidney:	n/a
48	chr11:71293996-71294046	MCF10A-Er-Src	breast:	n/a
49	chr11:71293996-71294046	HCM	heart:	n/a
50	chr11:71293996-71294046	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
KRTAP5-11	TF binding region
KRTAP5-14P	TF binding region
KRTAP5-14P	CpG island
KRTAP5-11	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71291400-71295200	Weak transcription	Right Atrium	heart
2	chr11:71291800-71297000	Weak transcription	Fetal Intestine Large	intestine
3	chr11:71291800-71299000	Weak transcription	Gastric	stomach
4	chr11:71292400-71294000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:71293000-71294000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:71293000-71294000	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr11:71293600-71300000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:71293800-71294000	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links