Variant report

Variant	rs3733905
Chromosome Location	chr5:96219561-96219562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96219096..96221374-chr5:96270247..96273227,3	MCF-7	breast:
2	chr5:96211554..96214084-chr5:96217636..96221209,3	K562	blood:

Variant related genes	Relation type
ENSG00000164308	Chromatin interaction
ENSG00000247121	Chromatin interaction
ENSG00000113441	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1134681	0.93[ASN][1000 genomes]
rs1643702	1.00[CEU][hapmap]
rs17087180	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs17515806	0.93[ASN][1000 genomes]
rs17550815	0.86[ASN][1000 genomes]
rs17550822	0.93[ASN][1000 genomes]
rs2303139	1.00[AMR][1000 genomes]
rs27731	0.83[CHD][hapmap];0.86[JPT][hapmap]
rs3733904	0.87[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3756618	1.00[AMR][1000 genomes]
rs3797787	0.86[JPT][hapmap];1.00[AMR][1000 genomes]
rs3797792	0.86[JPT][hapmap];1.00[AMR][1000 genomes]
rs3806936	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs3806939	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3806941	0.87[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3806942	0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3806943	0.93[ASN][1000 genomes]
rs3806944	0.87[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3822679	0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs3822687	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs4397149	0.93[ASN][1000 genomes]
rs4509047	0.90[ASN][1000 genomes]
rs6862437	0.93[ASN][1000 genomes]
rs6883674	0.93[ASN][1000 genomes]
rs6883859	0.93[ASN][1000 genomes]
rs7714122	0.87[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7721014	0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs7728999	0.93[ASN][1000 genomes]
rs7729489	0.93[ASN][1000 genomes]
rs7733301	0.87[CHD][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv432756	chr5:96113844-96234644	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96212600-96232000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:96212800-96220000	Weak transcription	Fetal Stomach	stomach
3	chr5:96213000-96239000	Weak transcription	Pancreas	Pancrea
4	chr5:96213200-96221600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:96213200-96225200	Weak transcription	Ovary	ovary
6	chr5:96213200-96229200	Weak transcription	Aorta	Aorta
7	chr5:96213400-96221400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:96213400-96221600	Weak transcription	Brain Angular Gyrus	brain
9	chr5:96213400-96223600	Weak transcription	Fetal Kidney	kidney
10	chr5:96213400-96237800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:96213400-96243800	Weak transcription	HepG2	liver
12	chr5:96213400-96247000	Weak transcription	Fetal Lung	lung
13	chr5:96214600-96221400	Weak transcription	Esophagus	oesophagus
14	chr5:96215200-96221200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:96215400-96222400	Genic enhancers	Fetal Thymus	thymus
16	chr5:96215800-96219600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
17	chr5:96216000-96220000	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:96216200-96220000	Weak transcription	Left Ventricle	heart
19	chr5:96217000-96221200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr5:96217200-96222600	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr5:96217400-96219600	Genic enhancers	Primary B cells from cord blood	blood
22	chr5:96217400-96221800	Genic enhancers	Dnd41	blood
23	chr5:96217400-96229200	Weak transcription	Colonic Mucosa	Colon
24	chr5:96217600-96221200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:96217600-96228800	Weak transcription	HSMM	muscle
26	chr5:96217600-96241600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:96217600-96250000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr5:96217800-96220400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:96217800-96220400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:96217800-96221400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:96217800-96224600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr5:96217800-96225200	Weak transcription	Gastric	stomach
33	chr5:96217800-96228800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr5:96217800-96229200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:96217800-96229200	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr5:96217800-96237800	Weak transcription	NHDF-Ad	bronchial
37	chr5:96218000-96220200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr5:96218000-96220200	Weak transcription	Placenta	Placenta
39	chr5:96218000-96220400	Weak transcription	Psoas Muscle	Psoas
40	chr5:96218000-96220400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:96218000-96220800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr5:96218000-96221200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr5:96218000-96221400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr5:96218000-96221600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:96218000-96222600	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr5:96218000-96222600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
47	chr5:96218000-96222600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:96218000-96225200	Weak transcription	Spleen	Spleen
49	chr5:96218000-96229000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:96218000-96229000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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