Variant report

Variant	rs3734318
Chromosome Location	chr6:37517871-37517872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr6:37516090-37518231	GM12878	blood:	n/a	n/a
2	CEBPB	chr6:37517272-37518017	GM12878	blood:	n/a	n/a
3	MTA3	chr6:37516811-37518136	GM12878	blood:	n/a	n/a
4	MTA3	chr6:37516431-37518190	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37463764..37465711-chr6:37517339..37519147,2	K562	blood:
2	chr6:37509394..37511566-chr6:37516140..37517910,2	K562	blood:
3	chr6:37514077..37516361-chr6:37517388..37519636,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL353597.1-3	chr6:37517780-37517928	XLOC_005279
2	lnc-AL353597.1-3	chr6:37517754-37517928	ENSG00000227920.2
3	lnc-AL353597.1-3	chr6:37516759-37518195	NONHSAT112271

No data

Variant related genes	Relation type
ENSG00000229559	TF binding region
ENSG00000229559	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17574699	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs72855462	0.94[ASN][1000 genomes]
rs72855466	0.96[ASN][1000 genomes]
rs868870	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv1006017	chr6:37516345-37530226	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37504400-37529200	Weak transcription	Right Atrium	heart
2	chr6:37507800-37520000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:37510800-37533800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:37512600-37518000	Enhancers	Primary B cells from cord blood	blood
5	chr6:37514200-37521400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:37514200-37522800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:37514400-37519600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:37514400-37520000	Weak transcription	A549	lung
9	chr6:37514400-37520400	Enhancers	Fetal Thymus	thymus
10	chr6:37514400-37521400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:37515000-37521200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:37515800-37518000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:37516000-37518200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:37516000-37519400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:37516000-37519600	Weak transcription	Fetal Brain Female	brain
16	chr6:37516000-37519800	Weak transcription	Brain Germinal Matrix	brain
17	chr6:37516000-37521000	Weak transcription	Primary T cells from cord blood	blood
18	chr6:37516000-37521200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:37516000-37521200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:37516200-37518200	Weak transcription	NH-A	brain
21	chr6:37516200-37520800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:37516200-37521200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:37516200-37521200	Weak transcription	Fetal Kidney	kidney
24	chr6:37516200-37521400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:37516400-37518000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:37516400-37519400	Weak transcription	HUVEC	blood vessel
27	chr6:37516400-37520200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:37516400-37520800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:37516400-37520800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:37516400-37527000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:37516600-37518200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:37516600-37518200	Weak transcription	NHEK	skin
33	chr6:37516600-37519000	Weak transcription	HMEC	breast
34	chr6:37516600-37521200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:37516600-37521400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:37517200-37520800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:37517400-37526200	Weak transcription	Thymus	Thymus
38	chr6:37517600-37518000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:37517600-37520800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:37517600-37521600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:37517800-37518800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:37517800-37518800	Weak transcription	Fetal Brain Male	brain
43	chr6:37517800-37519000	Enhancers	GM12878-XiMat	blood
44	chr6:37517800-37521000	Enhancers	Adipose Nuclei	Adipose
45	chr6:37517800-37523000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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