Variant report

Variant	rs868870
Chromosome Location	chr6:37503233-37503234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37479736..37482449-chr6:37501228..37503661,2	K562	blood:
2	chr6:37497734..37501605-chr6:37502729..37507040,5	K562	blood:
3	chr6:37479736..37486031-chr6:37501228..37507298,5	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12527956	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs17574699	0.93[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3734318	1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs72855462	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72855466	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv462914	chr6:37502585-37517485	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv602954	chr6:37502585-37517485	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37493800-37514000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:37500800-37503400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:37501400-37503600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:37501600-37503400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:37502000-37503400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:37502000-37503400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:37502000-37504400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:37502800-37503400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
9	chr6:37502800-37503400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
10	chr6:37502800-37503400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:37502800-37503400	Bivalent Enhancer	Fetal Brain Female	brain
12	chr6:37502800-37503600	Bivalent Enhancer	Fetal Stomach	stomach
13	chr6:37502800-37503800	Bivalent Enhancer	Fetal Kidney	kidney
14	chr6:37502800-37504000	Bivalent Enhancer	Fetal Brain Male	brain
15	chr6:37502800-37505800	Bivalent Enhancer	Fetal Lung	lung
16	chr6:37503000-37503400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:37503000-37503400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:37503000-37503400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
19	chr6:37503000-37503400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
20	chr6:37503000-37503400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr6:37503000-37503400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:37503000-37503400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:37503000-37503400	Bivalent Enhancer	Brain Germinal Matrix	brain
24	chr6:37503000-37503400	Bivalent Enhancer	Colon Smooth Muscle	Colon
25	chr6:37503000-37503600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:37503000-37503600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:37503000-37503800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:37503000-37503800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr6:37503000-37504000	Bivalent Enhancer	Fetal Muscle Leg	muscle
30	chr6:37503000-37504000	Bivalent Enhancer	Fetal Thymus	thymus
31	chr6:37503200-37503400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
32	chr6:37503200-37503400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:37503200-37503400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:37503200-37503400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:37503200-37503400	Enhancers	Right Atrium	heart
36	chr6:37503200-37503400	Enhancers	Right Ventricle	heart
37	chr6:37503200-37503400	Bivalent Enhancer	Spleen	Spleen
38	chr6:37503200-37503400	Enhancers	GM12878-XiMat	blood
39	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
40	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
41	chr6:37503200-37503600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:37503200-37503600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
43	chr6:37503200-37503600	Bivalent Enhancer	Primary B cells from cord blood	blood
44	chr6:37503200-37503600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr6:37503200-37503600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr6:37503200-37503600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:37503200-37503600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:37503200-37503600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:37503200-37503600	Bivalent Enhancer	Fetal Intestine Small	intestine
50	chr6:37503200-37503600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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