Variant report

Variant	rs3734838
Chromosome Location	chr6:30080231-30080232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30080189-30080239	GM12878	blood:	n/a
2	chr6:30080230-30080280	IMR90	lung:	fetal
3	chr6:30080230-30080280	SK-N-SH_RA	brain:	n/a
4	chr6:30080189-30080239	NH-A	brain:	n/a
5	chr6:30080230-30080280	HL-60	blood:	n/a
6	chr6:30080230-30080280	HCPEpiC	choroid plexus:	n/a
7	chr6:30080189-30080239	ECC-1	luminal epithelium:	n/a
8	chr6:30080189-30080239	SK-N-MC	brain:	n/a
9	chr6:30080189-30080239	HL-60	blood:	n/a
10	chr6:30080189-30080239	NT2-D1	testis:	n/a
11	chr6:30080230-30080280	ProgFib	skin:	n/a
12	chr6:30080230-30080280	HRE	kidney:	n/a
13	chr6:30080189-30080239	HPAEpiC	pulmonary alveolar:	n/a
14	chr6:30080189-30080239	HCM	heart:	n/a
15	chr6:30080189-30080239	H1-hESC	embryonic stem cell:	embryo
16	chr6:30080189-30080239	HepG2	liver:	n/a
17	chr6:30080230-30080280	T-47D	breast:	n/a
18	chr6:30080189-30080239	HEK293	kidney:	embryo
19	chr6:30080230-30080280	NHBE	bronchial:	n/a
20	chr6:30080189-30080239	GM12892	blood:	n/a
21	chr6:30080230-30080280	ovcar-3	ovarian:	n/a
22	chr6:30080189-30080239	T-47D	breast:	n/a
23	chr6:30080230-30080280	HNPCEpiC	eye:	n/a
24	chr6:30080230-30080280	AG09319	gingival:	n/a
25	chr6:30080230-30080280	HAEpiC	amniotic membrane:	n/a
26	chr6:30080230-30080280	A549	lung:	n/a
27	chr6:30080230-30080280	HepG2	liver:	n/a
28	chr6:30080230-30080280	NHDF-neo	bronchial:	n/a
29	chr6:30080230-30080280	PrEC	prostate:	n/a
30	chr6:30080189-30080239	HAEpiC	amniotic membrane:	n/a
31	chr6:30080230-30080280	BJ	skin:	n/a
32	chr6:30080189-30080239	U87	brain:	n/a
33	chr6:30080230-30080280	AG04450	lung:	fetal
34	chr6:30080230-30080280	GM12891	blood:	n/a
35	chr6:30080230-30080280	AG10803	skin:	n/a
36	chr6:30080189-30080239	CMK	blood:	n/a
37	chr6:30080230-30080280	SK-N-SH	brain:	n/a
38	chr6:30080230-30080280	SKMC	muscle:	n/a
39	chr6:30080189-30080239	HEEpiC	esophagus:	n/a
40	chr6:30080230-30080280	ECC-1	luminal epithelium:	n/a
41	chr6:30080189-30080239	SK-N-SH_RA	brain:	n/a
42	chr6:30080189-30080239	GM19239	blood:	n/a
43	chr6:30080230-30080280	HEEpiC	esophagus:	n/a
44	chr6:30080230-30080280	HCM	heart:	n/a
45	chr6:30080189-30080239	K562	blood:	n/a
46	chr6:30080230-30080280	K562	blood:	n/a
47	chr6:30080189-30080239	PANC-1	pancreas:	n/a
48	chr6:30080230-30080280	BE2_C	brain:	n/a
49	chr6:30080189-30080239	AoSMC	blood vessel:	n/a
50	chr6:30080189-30080239	LNCaP	prostate:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30072138..30074365-chr6:30079433..30082098,2	K562	blood:
2	chr6:30072893..30076173-chr6:30078690..30081417,3	MCF-7	breast:
3	chr6:30073473..30076763-chr6:30077230..30080756,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF39-5	chr6:30080166-30080252	NONHSAT108602

No data

Variant related genes	Relation type
TRIM31	CpG island
ENSG00000231226	Chromatin interaction
ENSG00000204616	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3815077	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9261421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261436	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261437	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261506	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9261520	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30078200-30080600	Active TSS	Stomach Mucosa	stomach
2	chr6:30078400-30081400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:30079000-30080400	Bivalent/Poised TSS	Fetal Stomach	stomach
4	chr6:30079200-30081000	Active TSS	Colonic Mucosa	Colon
5	chr6:30079400-30080400	Bivalent/Poised TSS	Small Intestine	intestine
6	chr6:30079400-30080600	Flanking Active TSS	Hela-S3	cervix
7	chr6:30079600-30080400	Enhancers	A549	lung
8	chr6:30080000-30080400	Active TSS	Fetal Intestine Small	intestine
9	chr6:30080000-30080600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
10	chr6:30080000-30080600	Enhancers	Gastric	stomach
11	chr6:30080000-30080600	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:30080000-30080800	Flanking Active TSS	Fetal Intestine Large	intestine
13	chr6:30080000-30081200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
14	chr6:30080000-30081800	Enhancers	Liver	Liver
15	chr6:30080200-30080600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:30080200-30080600	Enhancers	GM12878-XiMat	blood
17	chr6:30080200-30082400	Enhancers	HepG2	liver

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