Variant report

Variant	rs9261421
Chromosome Location	chr6:30079076-30079077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30079029-30079202	H1-hESC	embryonic stem cell:	n/a	n/a

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No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30079055-30079105	T-47D	breast:	n/a
2	chr6:30079055-30079105	HCM	heart:	n/a
3	chr6:30079055-30079105	NHBE	bronchial:	n/a
4	chr6:30079055-30079105	ovcar-3	ovarian:	n/a
5	chr6:30079055-30079105	NH-A	brain:	n/a
6	chr6:30079055-30079105	SKMC	muscle:	n/a
7	chr6:30079055-30079105	SK-N-SH_RA	brain:	n/a
8	chr6:30079055-30079105	HEEpiC	esophagus:	n/a
9	chr6:30079055-30079105	AG04449	skin:	fetal
10	chr6:30079055-30079105	AG09309	skin:	n/a
11	chr6:30079055-30079105	LNCaP	prostate:	n/a
12	chr6:30079055-30079105	GM12891	blood:	n/a
13	chr6:30079055-30079105	HRPEpiC	eye:	n/a
14	chr6:30079055-30079105	MCF10A-Er-Src	breast:	n/a
15	chr6:30079055-30079105	HCPEpiC	choroid plexus:	n/a
16	chr6:30079055-30079105	GM06990	blood:	n/a
17	chr6:30079055-30079105	A549	lung:	n/a
18	chr6:30079055-30079105	HCT-116	colon:	n/a
19	chr6:30079055-30079105	Jurkat	blood:	n/a
20	chr6:30079055-30079105	K562	blood:	n/a
21	chr6:30079055-30079105	ECC-1	luminal epithelium:	n/a
22	chr6:30079055-30079105	GM19239	blood:	n/a
23	chr6:30079055-30079105	GM12878	blood:	n/a
24	chr6:30079055-30079105	Caco-2	colon:	n/a
25	chr6:30079055-30079105	BJ	skin:	n/a
26	chr6:30079055-30079105	U87	brain:	n/a
27	chr6:30079055-30079105	HPAEpiC	pulmonary alveolar:	n/a
28	chr6:30079055-30079105	HIPEpiC	eye:	n/a
29	chr6:30079055-30079105	NT2-D1	testis:	n/a
30	chr6:30079055-30079105	BE2_C	brain:	n/a
31	chr6:30079055-30079105	HRE	kidney:	n/a
32	chr6:30079055-30079105	GM12892	blood:	n/a
33	chr6:30079055-30079105	HCF	heart:	n/a
34	chr6:30079055-30079105	NHDF-neo	bronchial:	n/a
35	chr6:30079055-30079105	H1-hESC	embryonic stem cell:	embryo
36	chr6:30079055-30079105	PFSK-1	brain:	n/a
37	chr6:30079055-30079105	HEK293	kidney:	embryo
38	chr6:30079055-30079105	HMEC	breast:	n/a
39	chr6:30079055-30079105	AoSMC	blood vessel:	n/a
40	chr6:30079055-30079105	IMR90	lung:	fetal
41	chr6:30079055-30079105	HRCEpiC	kidney:	n/a
42	chr6:30079055-30079105	RPTEC	kidney:	n/a
43	chr6:30079055-30079105	HNPCEpiC	eye:	n/a
44	chr6:30079055-30079105	Hela-S3	cervix:	n/a
45	chr6:30079055-30079105	HUVEC	blood vessel:	n/a
46	chr6:30079055-30079105	HepG2	liver:	n/a
47	chr6:30079055-30079105	ProgFib	skin:	n/a
48	chr6:30079055-30079105	SAEC	small airway:	n/a
49	chr6:30079055-30079105	SK-N-MC	brain:	n/a
50	chr6:30079055-30079105	AG04450	lung:	fetal

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30072893..30076173-chr6:30078690..30081417,3	MCF-7	breast:
2	chr6:30073473..30076763-chr6:30077230..30080756,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNF39-5	chr6:30078995-30079520	NONHSAT108602

No data

Variant related genes	Relation type
TRIM31	TF binding region
TRIM31	CpG island
ENSG00000231226	Chromatin interaction
ENSG00000204616	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3734838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815077	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9261436	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261437	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261506	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9261520	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30071600-30079200	Weak transcription	Gastric	stomach
2	chr6:30076000-30079400	Weak transcription	Hela-S3	cervix
3	chr6:30078200-30080600	Active TSS	Stomach Mucosa	stomach
4	chr6:30078400-30079200	Weak transcription	Colonic Mucosa	Colon
5	chr6:30078400-30079200	Active TSS	Fetal Intestine Small	intestine
6	chr6:30078400-30080000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:30078400-30081400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:30078600-30079200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:30079000-30079200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
10	chr6:30079000-30080400	Bivalent/Poised TSS	Fetal Stomach	stomach

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