Variant report

Variant	rs3735454
Chromosome Location	chr7:99091864-99091865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99071113..99073146-chr7:99090531..99092211,2	MCF-7	breast:
2	chr7:99070296..99071954-chr7:99090048..99092753,2	K562	blood:
3	chr7:99091519..99093818-chr7:99094601..99096196,2	K562	blood:
4	chr7:99082773..99088647-chr7:99089038..99094596,7	MCF-7	breast:
5	chr7:99088377..99091896-chr7:99094742..99098845,4	MCF-7	breast:
6	chr7:99091192..99093523-chr7:99128695..99131572,2	K562	blood:
7	chr7:99089753..99092320-chr7:99103072..99105553,2	K562	blood:
8	chr7:99079813..99086150-chr7:99087321..99093503,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198556	Chromatin interaction
ENSG00000160908	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10264272	1.00[CHB][hapmap]
rs13220949	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs6971175	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831069	chr7:98948128-99127584	Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99071400-99096200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99088400-99092200	ZNF genes & repeats	A549	lung
3	chr7:99089600-99094200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:99089800-99092600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:99089800-99092600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
6	chr7:99089800-99093200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
7	chr7:99089800-99094400	ZNF genes & repeats	Fetal Intestine Large	intestine
8	chr7:99089800-99094800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr7:99089800-99095400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr7:99090000-99092200	Strong transcription	HepG2	liver
11	chr7:99090000-99092200	ZNF genes & repeats	HMEC	breast
12	chr7:99090000-99093400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:99090000-99093400	ZNF genes & repeats	Fetal Thymus	thymus
14	chr7:99090000-99094400	ZNF genes & repeats	Fetal Intestine Small	intestine
15	chr7:99090000-99094400	ZNF genes & repeats	Fetal Stomach	stomach
16	chr7:99090200-99092600	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr7:99090200-99094000	Strong transcription	Dnd41	blood
18	chr7:99090200-99094200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr7:99090400-99092200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:99090400-99092200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:99090400-99092200	ZNF genes & repeats	Colon Smooth Muscle	Colon
22	chr7:99090400-99092200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr7:99090400-99092200	ZNF genes & repeats	Esophagus	oesophagus
24	chr7:99090400-99092200	ZNF genes & repeats	Fetal Kidney	kidney
25	chr7:99090400-99092200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr7:99090400-99092200	ZNF genes & repeats	HSMM	muscle
27	chr7:99090400-99092200	ZNF genes & repeats	HSMMtube	muscle
28	chr7:99090400-99092400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:99090400-99092400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:99090400-99092400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
31	chr7:99090400-99092400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:99090400-99092400	ZNF genes & repeats	Fetal Lung	lung
33	chr7:99090400-99092400	ZNF genes & repeats	Psoas Muscle	Psoas
34	chr7:99090400-99092400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
35	chr7:99090400-99092400	ZNF genes & repeats	NHEK	skin
36	chr7:99090400-99092400	ZNF genes & repeats	NHLF	lung
37	chr7:99090400-99092600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
38	chr7:99090400-99092600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:99090400-99092600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
40	chr7:99090400-99093000	ZNF genes & repeats	Spleen	Spleen
41	chr7:99090400-99093200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:99090400-99093200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr7:99090400-99093200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr7:99090400-99093400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:99090400-99093600	ZNF genes & repeats	Liver	Liver
46	chr7:99090400-99094200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:99090400-99094200	ZNF genes & repeats	Lung	lung
48	chr7:99090400-99094400	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr7:99090400-99094400	ZNF genes & repeats	Fetal Muscle Leg	muscle
50	chr7:99090400-99094600	ZNF genes & repeats	GM12878-XiMat	blood

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