Variant report

Variant	rs3735640
Chromosome Location	chr7:127236338-127236339
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:127227908..127231054-chr7:127231482..127236620,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000004059	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11973012	0.83[CHB][hapmap]
rs11976330	0.89[CHB][hapmap]
rs3757790	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3757791	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3779536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7778682	0.91[CHB][hapmap]
rs7799837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831122	chr7:127143207-127357885	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127229600-127241000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:127229800-127237400	Weak transcription	Right Atrium	heart
3	chr7:127231600-127237000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:127231600-127241000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:127232000-127238200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:127232000-127240600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:127232000-127240600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:127232000-127240800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:127232000-127243200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr7:127232000-127245600	Weak transcription	Aorta	Aorta
11	chr7:127232200-127236400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:127232200-127237600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:127232200-127238200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:127232200-127240000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:127232200-127240800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:127232200-127241000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr7:127232200-127241000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:127232200-127241600	Weak transcription	Adipose Nuclei	Adipose
19	chr7:127232200-127248200	Weak transcription	Spleen	Spleen
20	chr7:127232400-127240400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr7:127232800-127240800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:127233000-127236400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:127233200-127236400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:127233200-127244000	Weak transcription	Left Ventricle	heart
25	chr7:127233400-127236400	Weak transcription	Thymus	Thymus
26	chr7:127233400-127243000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:127233600-127236600	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr7:127233800-127243000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:127234000-127236800	Weak transcription	Fetal Brain Female	brain
30	chr7:127236000-127241000	Weak transcription	Pancreas	Pancrea
31	chr7:127236200-127236600	Enhancers	Primary hematopoietic stem cells	blood

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