Variant report
| Variant | rs7778682 |
|---|---|
| Chromosome Location | chr7:127154042-127154043 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11973012 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11973576 | 0.94[ASN][1000 genomes] |
| rs11973624 | 0.94[ASN][1000 genomes] |
| rs11976330 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11977193 | 0.92[ASN][1000 genomes] |
| rs1582254 | 1.00[ASN][1000 genomes] |
| rs17658240 | 0.96[ASN][1000 genomes] |
| rs17713428 | 0.86[ASN][1000 genomes] |
| rs17714259 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs17714284 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs3735640 | 0.91[CHB][hapmap] |
| rs3757790 | 0.90[CHB][hapmap] |
| rs3757791 | 0.90[CHB][hapmap] |
| rs3779536 | 0.90[CHB][hapmap] |
| rs55638956 | 0.86[ASN][1000 genomes] |
| rs55918628 | 0.86[ASN][1000 genomes] |
| rs55947450 | 0.86[ASN][1000 genomes] |
| rs56110618 | 0.91[ASN][1000 genomes] |
| rs56130760 | 0.86[ASN][1000 genomes] |
| rs56284869 | 0.86[ASN][1000 genomes] |
| rs6978712 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7457977 | 0.96[ASN][1000 genomes] |
| rs7778716 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs7783988 | 0.83[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs7784284 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7799837 | 0.89[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
