Variant report
| Variant | rs11977193 |
|---|---|
| Chromosome Location | chr7:127172605-127172606 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127031419..127033497-chr7:127171406..127174354,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048405 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11973012 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11973576 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11973624 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11976330 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1582254 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17658240 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17713428 | 0.84[EUR][1000 genomes] |
| rs17714259 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17714284 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55638956 | 0.85[EUR][1000 genomes] |
| rs55918628 | 0.85[EUR][1000 genomes] |
| rs55947450 | 0.81[EUR][1000 genomes] |
| rs56110618 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs56130760 | 0.85[EUR][1000 genomes] |
| rs56284869 | 0.85[EUR][1000 genomes] |
| rs6978712 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7457977 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7778682 | 0.92[ASN][1000 genomes] |
| rs7783988 | 0.85[EUR][1000 genomes] |
| rs7784284 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831122 | chr7:127143207-127357885 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
