Variant report

Variant	rs3736756
Chromosome Location	chr20:23377600-23377601
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23376182..23378262-chr20:23379017..23380696,2	K562	blood:
2	chr20:23365990..23367879-chr20:23377363..23380103,2	MCF-7	breast:
3	chr20:23336291..23339016-chr20:23377494..23379977,2	K562	blood:

Variant related genes	Relation type
ENSG00000232645	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10485644	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1076777	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109557	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes]
rs1122407	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12624341	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12625187	0.81[AMR][1000 genomes]
rs12625257	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12625297	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12625468	0.96[EUR][1000 genomes]
rs12625489	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12625948	0.94[AMR][1000 genomes]
rs12625959	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12625994	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16985266	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs16985303	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16985337	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2273237	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34036626	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34831633	0.94[AMR][1000 genomes]
rs3761276	0.85[AMR][1000 genomes]
rs3761278	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes]
rs56393556	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56693860	0.96[EUR][1000 genomes]
rs56725318	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57034369	1.00[AMR][1000 genomes]
rs57322153	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57436024	0.89[AMR][1000 genomes]
rs57535381	0.94[AMR][1000 genomes]
rs57896475	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58192622	0.94[AMR][1000 genomes]
rs59143301	0.94[AMR][1000 genomes]
rs59852988	0.96[EUR][1000 genomes]
rs60799291	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61024391	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61297472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61344818	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7265627	0.94[AMR][1000 genomes]
rs73901826	0.96[EUR][1000 genomes]
rs73901859	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73901870	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8115832	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8117246	0.96[EUR][1000 genomes]
rs8123389	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8125332	0.96[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736756	CSTL1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
3	chr20:23353000-23378200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr20:23354400-23389000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr20:23354400-23399800	Weak transcription	Hela-S3	cervix
6	chr20:23358200-23377800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr20:23361200-23399600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:23364800-23378000	Strong transcription	Primary T cells from cord blood	blood
9	chr20:23366400-23377600	Weak transcription	Right Atrium	heart
10	chr20:23366800-23382400	Strong transcription	Dnd41	blood
11	chr20:23367000-23378200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr20:23367200-23377600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:23367800-23380400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr20:23370800-23377800	Weak transcription	NH-A	brain
15	chr20:23372400-23378600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr20:23372800-23400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:23373400-23378400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr20:23374000-23379000	Strong transcription	Primary B cells from cord blood	blood
19	chr20:23375000-23380200	Weak transcription	GM12878-XiMat	blood
20	chr20:23375000-23389800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr20:23375200-23378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr20:23375200-23380200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr20:23375200-23381600	Weak transcription	Fetal Intestine Small	intestine
24	chr20:23375400-23381200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr20:23375600-23377600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr20:23375600-23377600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr20:23375600-23377600	Weak transcription	Brain Substantia Nigra	brain
28	chr20:23375600-23377600	Weak transcription	Fetal Stomach	stomach
29	chr20:23375600-23377600	Weak transcription	Right Ventricle	heart
30	chr20:23375600-23377800	Weak transcription	NHEK	skin
31	chr20:23375600-23378600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr20:23375600-23381600	Weak transcription	Fetal Thymus	thymus
33	chr20:23375600-23381800	Weak transcription	Gastric	stomach
34	chr20:23375600-23384400	Weak transcription	Fetal Lung	lung
35	chr20:23375600-23384600	Weak transcription	Brain Germinal Matrix	brain
36	chr20:23375600-23390600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr20:23375600-23396800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr20:23375600-23400000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr20:23375800-23377600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr20:23375800-23377600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr20:23375800-23377600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr20:23375800-23377600	Weak transcription	Brain Angular Gyrus	brain
43	chr20:23375800-23377600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr20:23375800-23377600	Weak transcription	Fetal Heart	heart
45	chr20:23375800-23377600	Weak transcription	Left Ventricle	heart
46	chr20:23375800-23377600	Weak transcription	Ovary	ovary
47	chr20:23375800-23377600	Weak transcription	Psoas Muscle	Psoas
48	chr20:23375800-23378400	Weak transcription	NHDF-Ad	bronchial
49	chr20:23375800-23378600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr20:23375800-23379000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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