Variant report

Variant	rs3736834
Chromosome Location	chr9:95042884-95042885
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95018820..95020529-chr9:95042331..95043865,2	K562	blood:
2	chr9:95012540..95014449-chr9:95040353..95043113,2	K562	blood:
3	chr9:95041855..95050591-chr9:95053528..95058799,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196305	Chromatin interaction
ENSG00000239183	Chromatin interaction

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs15717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16908281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518691	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518754	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519320	0.88[EUR][1000 genomes]
rs17519397	0.88[EUR][1000 genomes]
rs17519453	0.83[EUR][1000 genomes]
rs17590748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591007	1.00[EUR][1000 genomes]
rs17591372	0.88[EUR][1000 genomes]
rs17677599	0.90[ASN][1000 genomes]
rs17678735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044540	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2230405	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2236343	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236529	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2273860	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2274967	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28365880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34860658	0.83[EUR][1000 genomes]
rs3736836	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737147	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758228	1.00[EUR][1000 genomes]
rs3758230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758232	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780340	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780341	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3780342	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41276835	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41277647	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41277739	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41280223	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41297183	1.00[EUR][1000 genomes]
rs41301527	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41307467	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41312230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4298540	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59083571	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59627747	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61742574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67546506	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750403	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750404	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750405	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750407	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750408	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750409	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750418	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750419	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750420	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750421	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750422	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750426	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750427	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750430	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750431	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750432	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750433	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750434	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750437	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750438	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72750441	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750445	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750447	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72750448	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750449	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750450	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750451	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750454	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750456	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750457	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750465	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750466	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750468	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750469	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750482	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750491	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750493	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750494	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750496	0.94[EUR][1000 genomes]
rs72750498	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750500	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72750501	1.00[EUR][1000 genomes]
rs72750502	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752403	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752404	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752405	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752406	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752411	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752417	0.94[EUR][1000 genomes]
rs72752419	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752422	0.94[EUR][1000 genomes]
rs72752425	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752427	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752431	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72752435	0.94[EUR][1000 genomes]
rs72752442	1.00[EUR][1000 genomes]
rs72752443	1.00[EUR][1000 genomes]
rs72752444	1.00[EUR][1000 genomes]
rs72752445	1.00[EUR][1000 genomes]
rs72752446	1.00[EUR][1000 genomes]
rs72752449	1.00[EUR][1000 genomes]
rs72752453	1.00[EUR][1000 genomes]
rs72752454	1.00[EUR][1000 genomes]
rs72752457	1.00[EUR][1000 genomes]
rs72752458	1.00[EUR][1000 genomes]
rs72752460	1.00[EUR][1000 genomes]
rs72752463	1.00[EUR][1000 genomes]
rs72752467	0.83[EUR][1000 genomes]
rs72752471	0.88[EUR][1000 genomes]
rs72752472	0.88[EUR][1000 genomes]
rs72752474	0.83[EUR][1000 genomes]
rs72752475	0.88[EUR][1000 genomes]
rs72752477	0.88[EUR][1000 genomes]
rs72752479	0.88[EUR][1000 genomes]
rs72752482	0.88[EUR][1000 genomes]
rs72752483	0.88[EUR][1000 genomes]
rs72752484	0.88[EUR][1000 genomes]
rs72752485	0.88[EUR][1000 genomes]
rs72752486	0.88[EUR][1000 genomes]
rs72752492	0.88[EUR][1000 genomes]
rs72752493	0.88[EUR][1000 genomes]
rs72752497	0.88[EUR][1000 genomes]
rs7872423	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs921122	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv530947	chr9:94697309-95093377	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv917089	chr9:94857047-95099848	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv972780	chr9:95008644-95049016	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94982800-95045600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:94990200-95054000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:94991200-95052400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:94991200-95053600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:94991400-95050400	Strong transcription	Dnd41	blood
6	chr9:94991400-95052400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:94991400-95053600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:94991400-95053800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:94991400-95053800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:94991800-95053800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:94991800-95054000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:94994000-95053000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:94994600-95051200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr9:94996000-95048600	Strong transcription	Fetal Stomach	stomach
15	chr9:94996200-95051400	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr9:94996200-95051400	Strong transcription	Fetal Thymus	thymus
17	chr9:94996200-95052000	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:94996400-95051400	Strong transcription	Fetal Muscle Leg	muscle
19	chr9:94996400-95052000	Strong transcription	Duodenum Mucosa	Duodenum
20	chr9:94998600-95050600	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr9:94998600-95051200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr9:94998600-95051600	Strong transcription	Adipose Nuclei	Adipose
23	chr9:94998800-95045000	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:94998800-95048000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr9:94998800-95049600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:94998800-95050200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:94998800-95051400	Strong transcription	Fetal Intestine Large	intestine
28	chr9:94999000-95043200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:94999000-95048800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:94999400-95051000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr9:94999600-95049600	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr9:94999800-95048400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr9:95000400-95048600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:95000400-95048800	Strong transcription	Left Ventricle	heart
35	chr9:95000400-95050800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:95000600-95045000	Strong transcription	Primary B cells from cord blood	blood
37	chr9:95000600-95049000	Strong transcription	Placenta	Placenta
38	chr9:95002600-95054000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:95004600-95046600	Strong transcription	Brain Anterior Caudate	brain
40	chr9:95009000-95053800	Strong transcription	HSMM	muscle
41	chr9:95009600-95054000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:95011400-95044600	Strong transcription	A549	lung
43	chr9:95011600-95052000	Strong transcription	K562	blood
44	chr9:95011800-95051400	Strong transcription	HepG2	liver
45	chr9:95012000-95052200	Strong transcription	GM12878-XiMat	blood
46	chr9:95012200-95047200	Strong transcription	Lung	lung
47	chr9:95012600-95043600	Strong transcription	Ovary	ovary
48	chr9:95015400-95053000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr9:95015800-95053200	Strong transcription	Hela-S3	cervix
50	chr9:95016800-95046400	Strong transcription	Colon Smooth Muscle	Colon

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