Variant report

Variant	rs72752417
Chromosome Location	chr9:95131404-95131405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95057188..95059914-chr9:95129364..95132359,2	K562	blood:
2	chr9:95123897..95125833-chr9:95129339..95132296,2	MCF-7	breast:

Extended variants
information (count: 167 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:160)

rs_ID	r²[population]
rs15717	0.94[EUR][1000 genomes]
rs16908281	0.94[EUR][1000 genomes]
rs17518691	0.83[EUR][1000 genomes]
rs17518754	0.83[EUR][1000 genomes]
rs17519320	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17519397	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17519453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17519719	1.00[AMR][1000 genomes]
rs17519922	1.00[AMR][1000 genomes]
rs17590748	0.94[EUR][1000 genomes]
rs17591007	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17591372	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17591776	1.00[AMR][1000 genomes]
rs17591958	1.00[AMR][1000 genomes]
rs17678735	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2044540	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2230405	0.83[EUR][1000 genomes]
rs2236343	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2236344	0.94[EUR][1000 genomes]
rs2236529	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2273860	0.83[EUR][1000 genomes]
rs2274967	1.00[EUR][1000 genomes]
rs28365880	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34758505	0.93[AMR][1000 genomes]
rs34860658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3736834	0.94[EUR][1000 genomes]
rs3736836	0.94[EUR][1000 genomes]
rs3737147	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3758228	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3758230	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3758231	0.94[EUR][1000 genomes]
rs3758232	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3780340	0.83[EUR][1000 genomes]
rs3780341	0.83[EUR][1000 genomes]
rs3780342	0.83[EUR][1000 genomes]
rs3780348	1.00[AMR][1000 genomes]
rs3780349	1.00[AMR][1000 genomes]
rs41276835	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41277647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41277739	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41280223	0.83[EUR][1000 genomes]
rs41297183	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41301527	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41307467	0.83[EUR][1000 genomes]
rs41312230	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4298540	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59083571	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59627747	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61742574	0.94[EUR][1000 genomes]
rs67546506	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72750403	0.83[EUR][1000 genomes]
rs72750404	0.83[EUR][1000 genomes]
rs72750405	0.83[EUR][1000 genomes]
rs72750407	0.83[EUR][1000 genomes]
rs72750408	0.83[EUR][1000 genomes]
rs72750409	0.83[EUR][1000 genomes]
rs72750418	0.83[EUR][1000 genomes]
rs72750420	0.83[EUR][1000 genomes]
rs72750421	0.83[EUR][1000 genomes]
rs72750422	0.83[EUR][1000 genomes]
rs72750426	0.83[EUR][1000 genomes]
rs72750427	0.83[EUR][1000 genomes]
rs72750430	0.83[EUR][1000 genomes]
rs72750431	0.83[EUR][1000 genomes]
rs72750432	0.83[EUR][1000 genomes]
rs72750433	0.83[EUR][1000 genomes]
rs72750434	0.83[EUR][1000 genomes]
rs72750437	0.83[EUR][1000 genomes]
rs72750438	1.00[AFR][1000 genomes]
rs72750441	0.83[EUR][1000 genomes]
rs72750445	0.83[EUR][1000 genomes]
rs72750448	0.83[EUR][1000 genomes]
rs72750449	0.83[EUR][1000 genomes]
rs72750450	0.83[EUR][1000 genomes]
rs72750451	0.83[EUR][1000 genomes]
rs72750454	0.83[EUR][1000 genomes]
rs72750456	0.83[EUR][1000 genomes]
rs72750457	0.89[EUR][1000 genomes]
rs72750458	0.94[EUR][1000 genomes]
rs72750463	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750465	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750466	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750468	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750469	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750472	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750474	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750477	0.94[EUR][1000 genomes]
rs72750478	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750479	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750482	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750485	0.94[EUR][1000 genomes]
rs72750487	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750490	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72750491	0.93[AMR][1000 genomes]
rs72750493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750494	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750498	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750500	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72750501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72750502	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752403	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752404	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752405	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752406	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752411	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752419	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752425	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752431	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72752442	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752443	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752444	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752445	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752446	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752449	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752453	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752454	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752457	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752458	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752460	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752463	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72752467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72752469	1.00[AMR][1000 genomes]
rs72752471	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752472	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72752475	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752477	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752479	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752482	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752483	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752484	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752485	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752486	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752492	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752493	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752497	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72752502	1.00[AMR][1000 genomes]
rs72754403	1.00[AMR][1000 genomes]
rs72754404	1.00[AMR][1000 genomes]
rs72754408	1.00[AMR][1000 genomes]
rs72754410	1.00[AMR][1000 genomes]
rs72754411	1.00[AMR][1000 genomes]
rs72754415	1.00[AMR][1000 genomes]
rs72754418	1.00[AMR][1000 genomes]
rs72754420	1.00[AMR][1000 genomes]
rs72754421	1.00[AMR][1000 genomes]
rs72754423	1.00[AMR][1000 genomes]
rs72754425	1.00[AMR][1000 genomes]
rs72754427	1.00[AMR][1000 genomes]
rs72754464	0.82[ASN][1000 genomes]
rs72754480	0.82[ASN][1000 genomes]
rs72754485	0.82[ASN][1000 genomes]
rs72754487	0.82[ASN][1000 genomes]
rs7872423	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs921122	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv1046733	chr9:94690622-95138564	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv1045165	chr9:95057462-95138564	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1053205	chr9:95119195-95182612	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95117000-95134800	Weak transcription	Ovary	ovary
2	chr9:95118000-95135000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr9:95122200-95138600	Weak transcription	Aorta	Aorta
4	chr9:95122400-95132200	Weak transcription	Fetal Intestine Small	intestine
5	chr9:95122800-95134800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:95122800-95135400	Weak transcription	Fetal Thymus	thymus
7	chr9:95128000-95141400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:95128400-95146600	Weak transcription	NHEK	skin
9	chr9:95129400-95134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:95129400-95134600	Weak transcription	Dnd41	blood
11	chr9:95129400-95134600	Weak transcription	K562	blood
12	chr9:95129400-95141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:95130600-95134800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:95131200-95131800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:95131200-95132200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr9:95131400-95131800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:95131400-95131800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:95131400-95132000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:95131400-95132000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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