Variant report

Variant	rs72754464
Chromosome Location	chr9:95328189-95328190
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95324026..95325941-chr9:95326623..95329025,2	MCF-7	breast:
2	chr9:95323575..95325802-chr9:95326902..95329707,2	K562	blood:

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs17365144	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17366134	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17462606	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17519320	0.81[ASN][1000 genomes]
rs17519397	0.81[ASN][1000 genomes]
rs17519453	0.95[ASN][1000 genomes]
rs17519719	0.81[ASN][1000 genomes]
rs17519922	0.81[ASN][1000 genomes]
rs17591372	0.81[ASN][1000 genomes]
rs17591776	0.81[ASN][1000 genomes]
rs17591958	0.81[ASN][1000 genomes]
rs17592026	0.81[ASN][1000 genomes]
rs2277165	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2277167	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2277170	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296671	0.86[AFR][1000 genomes]
rs34860658	0.95[ASN][1000 genomes]
rs3780348	0.81[ASN][1000 genomes]
rs3802383	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41266685	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41273374	0.85[EUR][1000 genomes]
rs41278699	0.81[ASN][1000 genomes]
rs41305495	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41312236	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72750496	0.82[ASN][1000 genomes]
rs72752417	0.82[ASN][1000 genomes]
rs72752422	0.82[ASN][1000 genomes]
rs72752435	0.91[ASN][1000 genomes]
rs72752467	0.91[ASN][1000 genomes]
rs72752471	0.81[ASN][1000 genomes]
rs72752472	0.81[ASN][1000 genomes]
rs72752474	0.95[ASN][1000 genomes]
rs72752484	0.81[ASN][1000 genomes]
rs72752485	0.81[ASN][1000 genomes]
rs72752486	0.81[ASN][1000 genomes]
rs72752492	0.81[ASN][1000 genomes]
rs72752493	0.81[ASN][1000 genomes]
rs72752497	0.81[ASN][1000 genomes]
rs72752502	0.81[ASN][1000 genomes]
rs72754403	0.81[ASN][1000 genomes]
rs72754404	0.81[ASN][1000 genomes]
rs72754408	0.81[ASN][1000 genomes]
rs72754410	0.81[ASN][1000 genomes]
rs72754411	0.81[ASN][1000 genomes]
rs72754415	0.81[ASN][1000 genomes]
rs72754418	0.81[ASN][1000 genomes]
rs72754420	0.81[ASN][1000 genomes]
rs72754421	0.81[ASN][1000 genomes]
rs72754423	0.81[ASN][1000 genomes]
rs72754425	0.81[ASN][1000 genomes]
rs72754429	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754430	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754433	0.85[AMR][1000 genomes]
rs72754434	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754435	0.85[AMR][1000 genomes]
rs72754436	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754440	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754442	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754443	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754444	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754445	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754446	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754447	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754450	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754457	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754461	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754463	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754465	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754470	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754477	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754480	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754482	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754483	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754485	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754487	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754489	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754491	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754493	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754496	0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72754499	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754501	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72756403	0.92[AMR][1000 genomes]
rs72756404	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756405	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756406	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756408	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756410	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756414	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756415	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756416	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756418	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756423	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756424	0.92[AMR][1000 genomes]
rs72756425	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756426	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756427	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756431	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756433	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756437	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756438	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756440	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756441	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756442	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756443	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756444	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756446	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756447	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756448	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756452	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756455	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756457	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756458	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756459	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756460	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756462	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756464	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756465	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756467	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756468	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756469	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756471	0.85[EUR][1000 genomes]
rs72756478	0.85[EUR][1000 genomes]
rs72756483	0.85[EUR][1000 genomes]
rs72756486	0.85[EUR][1000 genomes]
rs72756489	0.85[EUR][1000 genomes]
rs72756497	0.85[EUR][1000 genomes]
rs72756498	0.85[EUR][1000 genomes]
rs72756500	0.85[EUR][1000 genomes]
rs72758504	0.85[EUR][1000 genomes]
rs72758505	0.85[EUR][1000 genomes]
rs72758508	0.85[EUR][1000 genomes]
rs72758519	0.85[EUR][1000 genomes]
rs72758524	0.85[EUR][1000 genomes]
rs72758525	0.85[EUR][1000 genomes]
rs72758536	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95324000-95328200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:95327400-95329800	Weak transcription	NH-A	brain

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