Variant report

Variant	rs72754457
Chromosome Location	chr9:95320961-95320962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17519320	0.95[ASN][1000 genomes]
rs17519397	0.95[ASN][1000 genomes]
rs17519453	0.81[ASN][1000 genomes]
rs17519719	0.95[ASN][1000 genomes]
rs17519922	0.95[ASN][1000 genomes]
rs17591007	0.90[ASN][1000 genomes]
rs17591372	0.95[ASN][1000 genomes]
rs17591776	0.95[ASN][1000 genomes]
rs17591958	0.95[ASN][1000 genomes]
rs17592026	0.95[ASN][1000 genomes]
rs2236529	0.90[ASN][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34758505	0.89[ASN][1000 genomes]
rs34860658	0.81[ASN][1000 genomes]
rs3758228	0.90[ASN][1000 genomes]
rs3780348	0.95[ASN][1000 genomes]
rs3780349	0.90[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41278699	0.95[ASN][1000 genomes]
rs41301527	0.90[ASN][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750499	0.83[AMR][1000 genomes]
rs72752442	0.85[ASN][1000 genomes]
rs72752443	0.85[ASN][1000 genomes]
rs72752444	0.85[ASN][1000 genomes]
rs72752445	0.90[ASN][1000 genomes]
rs72752446	0.90[ASN][1000 genomes]
rs72752449	0.90[ASN][1000 genomes]
rs72752453	0.90[ASN][1000 genomes]
rs72752454	0.90[ASN][1000 genomes]
rs72752457	0.90[ASN][1000 genomes]
rs72752458	0.90[ASN][1000 genomes]
rs72752460	0.90[ASN][1000 genomes]
rs72752463	0.90[ASN][1000 genomes]
rs72752469	0.90[ASN][1000 genomes]
rs72752471	0.95[ASN][1000 genomes]
rs72752472	0.95[ASN][1000 genomes]
rs72752474	0.81[ASN][1000 genomes]
rs72752475	0.90[ASN][1000 genomes]
rs72752477	0.90[ASN][1000 genomes]
rs72752479	0.90[ASN][1000 genomes]
rs72752482	0.90[ASN][1000 genomes]
rs72752483	0.90[ASN][1000 genomes]
rs72752484	0.95[ASN][1000 genomes]
rs72752485	0.95[ASN][1000 genomes]
rs72752486	0.95[ASN][1000 genomes]
rs72752492	0.95[ASN][1000 genomes]
rs72752493	0.95[ASN][1000 genomes]
rs72752497	0.95[ASN][1000 genomes]
rs72752502	0.95[ASN][1000 genomes]
rs72754403	0.95[ASN][1000 genomes]
rs72754404	0.95[ASN][1000 genomes]
rs72754408	0.95[ASN][1000 genomes]
rs72754410	0.95[ASN][1000 genomes]
rs72754411	0.95[ASN][1000 genomes]
rs72754415	0.95[ASN][1000 genomes]
rs72754418	0.95[ASN][1000 genomes]
rs72754420	0.95[ASN][1000 genomes]
rs72754421	0.95[ASN][1000 genomes]
rs72754423	0.95[ASN][1000 genomes]
rs72754425	0.95[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754487	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72758524	0.92[EUR][1000 genomes]
rs72758525	0.92[EUR][1000 genomes]
rs72758536	0.88[EUR][1000 genomes]
rs72758539	0.84[EUR][1000 genomes]
rs72758540	0.84[EUR][1000 genomes]
rs72758542	0.84[EUR][1000 genomes]
rs72758543	0.84[EUR][1000 genomes]
rs72758545	0.84[EUR][1000 genomes]
rs72758547	0.84[EUR][1000 genomes]
rs72758554	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95308600-95324000	Weak transcription	Fetal Intestine Small	intestine
2	chr9:95310800-95323600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:95319200-95323000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:95320000-95321600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:95320600-95321000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:95320600-95321200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:95320600-95321400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr9:95320600-95321600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:95320600-95324200	Weak transcription	Small Intestine	intestine
10	chr9:95320800-95321000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:95320800-95321000	Enhancers	Adipose Nuclei	Adipose
12	chr9:95320800-95321000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:95320800-95321200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:95320800-95321200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:95320800-95321200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:95320800-95321400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:95320800-95321400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:95320800-95321400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:95320800-95321400	Enhancers	Esophagus	oesophagus
20	chr9:95320800-95321600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr9:95320800-95321600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:95320800-95321600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr9:95320800-95321800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr9:95320800-95321800	Enhancers	K562	blood

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