Variant report

Variant	rs72758510
Chromosome Location	chr9:95498767-95498768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95497607..95506128-chr9:95524589..95529183,18	MCF-7	breast:
2	chr9:95497520..95500210-chr9:95502956..95506656,3	MCF-7	breast:
3	chr9:95498170..95500745-chr9:95500865..95503028,2	K562	blood:
4	chr9:95489709..95492274-chr9:95498684..95502250,4	MCF-7	breast:
5	chr9:95495321..95504616-chr9:95523710..95529272,20	MCF-7	breast:
6	chr9:95432369..95434159-chr9:95497639..95499234,2	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs17365144	0.83[AMR][1000 genomes]
rs17366134	0.83[AMR][1000 genomes]
rs2277165	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2277167	0.83[AMR][1000 genomes]
rs2277170	0.83[AMR][1000 genomes]
rs3802383	0.83[AMR][1000 genomes]
rs41266685	0.83[AMR][1000 genomes]
rs41273374	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs41305495	0.83[AMR][1000 genomes]
rs41312236	0.83[AMR][1000 genomes]
rs72754433	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72754435	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72754457	0.83[AMR][1000 genomes]
rs72754461	0.83[AMR][1000 genomes]
rs72754463	0.83[AMR][1000 genomes]
rs72754465	0.83[AMR][1000 genomes]
rs72754470	0.83[AMR][1000 genomes]
rs72754477	0.83[AMR][1000 genomes]
rs72754480	0.83[AMR][1000 genomes]
rs72754482	0.83[AMR][1000 genomes]
rs72754483	0.83[AMR][1000 genomes]
rs72754485	0.83[AMR][1000 genomes]
rs72754489	0.83[AMR][1000 genomes]
rs72754491	0.83[AMR][1000 genomes]
rs72754493	0.83[AMR][1000 genomes]
rs72754496	0.83[AMR][1000 genomes]
rs72754499	0.83[AMR][1000 genomes]
rs72754501	0.83[AMR][1000 genomes]
rs72756403	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72756404	0.83[AMR][1000 genomes]
rs72756405	0.83[AMR][1000 genomes]
rs72756406	0.83[AMR][1000 genomes]
rs72756408	0.83[AMR][1000 genomes]
rs72756410	0.83[AMR][1000 genomes]
rs72756414	0.83[AMR][1000 genomes]
rs72756415	0.83[AMR][1000 genomes]
rs72756416	0.83[AMR][1000 genomes]
rs72756424	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756426	0.83[AMR][1000 genomes]
rs72756427	0.83[AMR][1000 genomes]
rs72756433	0.83[AMR][1000 genomes]
rs72756438	0.83[AMR][1000 genomes]
rs72756440	0.83[AMR][1000 genomes]
rs72756441	0.83[AMR][1000 genomes]
rs72756442	0.83[AMR][1000 genomes]
rs72756443	0.83[AMR][1000 genomes]
rs72756446	0.83[AMR][1000 genomes]
rs72756447	0.83[AMR][1000 genomes]
rs72756448	0.83[AMR][1000 genomes]
rs72756452	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756455	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756457	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756458	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756471	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756472	0.82[ASN][1000 genomes]
rs72756478	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756483	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756486	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756489	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72756497	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72756498	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72756500	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758504	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758505	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758508	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758521	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758523	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758524	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758525	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758526	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758532	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758535	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758536	0.89[ASN][1000 genomes]
rs72758539	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758540	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758542	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758543	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758544	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758545	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758547	0.83[AMR][1000 genomes]
rs72758549	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758552	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758554	0.83[AMR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95475600-95499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:95482800-95499400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:95484600-95499400	Weak transcription	Osteobl	bone
4	chr9:95484800-95501800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:95485600-95511600	Weak transcription	Aorta	Aorta
6	chr9:95489800-95499000	Weak transcription	HSMMtube	muscle
7	chr9:95490000-95507400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:95490400-95501400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr9:95490600-95502200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:95491200-95499800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:95491200-95503000	Weak transcription	Fetal Kidney	kidney
12	chr9:95491400-95499000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr9:95491400-95499200	Weak transcription	Small Intestine	intestine
14	chr9:95491400-95499400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:95491400-95501400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:95491400-95501800	Weak transcription	Liver	Liver
17	chr9:95491400-95507600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:95491600-95499000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr9:95491600-95499800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:95491600-95500000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:95491600-95500400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr9:95491600-95502400	Weak transcription	Primary T cells from cord blood	blood
23	chr9:95491600-95503000	Weak transcription	Fetal Lung	lung
24	chr9:95491800-95507600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:95492200-95499400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:95492200-95501000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:95492200-95503200	Weak transcription	HepG2	liver
28	chr9:95492400-95501000	Weak transcription	Fetal Brain Female	brain
29	chr9:95492600-95501000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:95493600-95499600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:95493600-95499600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:95493800-95500000	Weak transcription	Fetal Stomach	stomach
33	chr9:95494200-95499000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:95494400-95500400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr9:95494400-95500600	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:95494600-95499200	Weak transcription	Brain Anterior Caudate	brain
37	chr9:95494600-95500400	Weak transcription	Thymus	Thymus
38	chr9:95496400-95502400	Enhancers	Placenta	Placenta
39	chr9:95496600-95502400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:95496800-95501800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:95496800-95502200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:95496800-95502400	Enhancers	Primary B cells from cord blood	blood
43	chr9:95496800-95502400	Enhancers	Right Ventricle	heart
44	chr9:95496800-95502800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:95496800-95506600	Enhancers	Primary B cells from peripheral blood	blood
46	chr9:95497000-95498800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr9:95497000-95499200	Enhancers	Fetal Intestine Small	intestine
48	chr9:95497000-95499400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr9:95497000-95499400	Enhancers	Fetal Intestine Large	intestine
50	chr9:95497000-95499800	Enhancers	NHEK	skin

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