Variant report

Variant	rs72758549
Chromosome Location	chr9:95549169-95549170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
2	chr9:95540552..95544510-chr9:95545450..95549411,3	K562	blood:
3	chr9:95526931..95529309-chr9:95548771..95551170,2	K562	blood:
4	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs41273374	0.83[AMR][1000 genomes]
rs72756424	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes]
rs72756478	0.83[AMR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes]
rs72758525	1.00[AMR][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes]
rs72758539	1.00[AMR][1000 genomes]
rs72758540	1.00[AMR][1000 genomes]
rs72758542	1.00[AMR][1000 genomes]
rs72758543	1.00[AMR][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758545	1.00[AMR][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95546000-95553000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:95546000-95553000	Weak transcription	NHEK	skin

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