Variant report

Variant	rs72756489
Chromosome Location	chr9:95466639-95466640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95464995..95467333-chr9:95469137..95470873,3	K562	blood:
2	chr9:95446803..95449319-chr9:95465675..95467741,2	MCF-7	breast:

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs17365144	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17366134	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17462606	0.81[EUR][1000 genomes]
rs2277165	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2277170	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3802383	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41266685	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41273374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41305495	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41312236	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754429	0.88[EUR][1000 genomes]
rs72754430	0.92[EUR][1000 genomes]
rs72754434	0.92[EUR][1000 genomes]
rs72754436	0.92[EUR][1000 genomes]
rs72754437	0.92[EUR][1000 genomes]
rs72754440	0.92[EUR][1000 genomes]
rs72754442	0.92[EUR][1000 genomes]
rs72754443	0.92[EUR][1000 genomes]
rs72754444	0.92[EUR][1000 genomes]
rs72754445	0.92[EUR][1000 genomes]
rs72754446	0.92[EUR][1000 genomes]
rs72754447	0.92[EUR][1000 genomes]
rs72754450	0.88[EUR][1000 genomes]
rs72754452	0.92[EUR][1000 genomes]
rs72754457	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754461	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754463	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754464	0.85[EUR][1000 genomes]
rs72754465	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754470	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754477	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754480	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754482	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754483	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754485	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754489	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754493	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754496	0.83[AMR][1000 genomes]
rs72754499	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72754501	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756403	0.83[AMR][1000 genomes]
rs72756404	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756405	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756406	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756408	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756410	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756414	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756415	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756416	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72756418	0.92[EUR][1000 genomes]
rs72756423	0.88[EUR][1000 genomes]
rs72756424	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72756425	0.88[EUR][1000 genomes]
rs72756426	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756427	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72756431	0.96[EUR][1000 genomes]
rs72756433	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756437	0.96[EUR][1000 genomes]
rs72756438	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756440	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756441	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756442	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756443	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756444	0.96[EUR][1000 genomes]
rs72756446	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756447	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756448	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756452	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758510	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758521	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758523	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758525	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758526	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758532	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758535	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758536	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758539	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758540	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758542	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758543	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758544	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758545	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758547	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	0.83[AMR][1000 genomes]
rs72758552	0.83[AMR][1000 genomes]
rs72758554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95460800-95473000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr9:95461000-95466800	Weak transcription	Primary T cells from cord blood	blood
3	chr9:95461200-95471200	Weak transcription	Fetal Brain Female	brain
4	chr9:95461200-95472200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:95461400-95468400	Weak transcription	GM12878-XiMat	blood
6	chr9:95461400-95471200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:95461400-95471400	Weak transcription	Aorta	Aorta
8	chr9:95461400-95471400	Weak transcription	Brain Germinal Matrix	brain
9	chr9:95461400-95472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:95461600-95468200	Weak transcription	Primary B cells from cord blood	blood
11	chr9:95461600-95469000	Weak transcription	Esophagus	oesophagus
12	chr9:95461800-95471200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:95463800-95466800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:95464000-95471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:95464600-95466800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:95464600-95471400	Weak transcription	Fetal Intestine Large	intestine
17	chr9:95464600-95473200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr9:95464800-95470800	Weak transcription	HSMM	muscle
19	chr9:95464800-95471200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:95464800-95471200	Weak transcription	Placenta	Placenta
21	chr9:95464800-95474600	Weak transcription	K562	blood
22	chr9:95464800-95477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:95465000-95471400	Weak transcription	Fetal Muscle Leg	muscle
24	chr9:95465000-95472400	Weak transcription	A549	lung
25	chr9:95465200-95468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:95465200-95471000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:95465200-95471200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:95465200-95471200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:95465200-95471400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr9:95465200-95471600	Weak transcription	Fetal Stomach	stomach
31	chr9:95465200-95471800	Weak transcription	Brain Anterior Caudate	brain
32	chr9:95465200-95472200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:95465200-95474200	Weak transcription	Hela-S3	cervix
34	chr9:95465400-95470800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:95465400-95471200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:95465400-95471400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr9:95465400-95471400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:95465600-95471000	Weak transcription	Thymus	Thymus
39	chr9:95465600-95473400	Weak transcription	NHDF-Ad	bronchial
40	chr9:95465800-95471400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:95465800-95471800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:95466000-95468600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:95466200-95467200	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr9:95466400-95466800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:95466400-95467200	Strong transcription	Fetal Thymus	thymus
46	chr9:95466400-95467800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links