Variant report

Variant	rs72756467
Chromosome Location	chr9:95442637-95442638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:95442188-95442848	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr9:95442317-95442846	MCF10A-Er-Src	breast:	n/a	chr9:95442503-95442511
3	FOS	chr9:95442340-95442845	MCF10A-Er-Src	breast:	n/a	chr9:95442503-95442511
4	STAT3	chr9:95442292-95442903	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr9:95442185-95443776	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr9:95442300-95442898	MCF10A-Er-Src	breast:	n/a	chr9:95442503-95442511
7	POLR2A	chr9:95442185-95442845	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr9:95442319-95442694	U87	brain:	n/a	n/a
9	MYC	chr9:95442356-95442789	MCF10A-Er-Src	breast:	n/a	n/a
10	CEBPB	chr9:95442339-95442701	Hela-S3	cervix:	n/a	chr9:95442514-95442525
11	POLR2A	chr9:95442194-95443153	U87	brain:	n/a	n/a
12	STAT3	chr9:95442247-95442900	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr9:95442344-95442738	MCF10A-Er-Src	breast:	n/a	chr9:95442503-95442511
14	POLR2A	chr9:95442194-95443159	U87	brain:	n/a	n/a
15	CEBPB	chr9:95442380-95442645	IMR90	lung:	n/a	chr9:95442514-95442525
16	STAT3	chr9:95442315-95442849	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95436301..95439240-chr9:95442495..95445475,2	K562	blood:
2	chr9:95432210..95434644-chr9:95442225..95447391,5	K562	blood:
3	chr9:95439856..95442869-chr9:95443168..95446358,4	MCF-7	breast:
4	chr9:95440290..95443133-chr9:95467727..95470329,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213669	TF binding region
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs17365144	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17366134	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17462606	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2277165	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277167	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277170	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34758505	0.82[ASN][1000 genomes]
rs3802383	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41266685	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41273374	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41305495	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41312236	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754429	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754430	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754433	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72754434	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754435	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72754436	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754440	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754442	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754443	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754444	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754445	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754446	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754447	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754450	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754452	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754457	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754461	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754463	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754464	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754465	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754470	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754477	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754480	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754482	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754483	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754485	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754487	0.85[AMR][1000 genomes]
rs72754489	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754491	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754493	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754496	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72754499	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754501	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756403	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756404	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756405	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756406	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756408	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756410	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756414	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756415	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756416	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756418	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756423	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756424	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72756425	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756426	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756427	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756431	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756433	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756437	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756438	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756441	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756442	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756443	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756444	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756446	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756447	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756448	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756452	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756455	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756457	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756458	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756471	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756472	1.00[ASN][1000 genomes]
rs72756478	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756483	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756486	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756489	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756498	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756500	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758504	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758505	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758508	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758510	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72758519	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758521	0.82[ASN][1000 genomes]
rs72758523	0.82[ASN][1000 genomes]
rs72758524	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758525	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758526	0.82[ASN][1000 genomes]
rs72758532	0.82[ASN][1000 genomes]
rs72758535	0.82[ASN][1000 genomes]
rs72758536	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758539	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758540	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758542	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758543	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758544	0.82[ASN][1000 genomes]
rs72758545	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758547	0.92[EUR][1000 genomes]
rs72758554	0.92[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95433400-95442800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95433800-95444000	Weak transcription	Fetal Brain Female	brain
3	chr9:95434200-95442800	Weak transcription	Placenta	Placenta
4	chr9:95441000-95443000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:95441800-95442800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:95441800-95443000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:95441800-95443200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:95441800-95443200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:95441800-95444200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:95441800-95444400	Enhancers	HMEC	breast
11	chr9:95442000-95442800	Weak transcription	Spleen	Spleen
12	chr9:95442200-95443200	Enhancers	HSMM	muscle
13	chr9:95442200-95443400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:95442200-95443400	Enhancers	Osteobl	bone
15	chr9:95442200-95443600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:95442400-95442800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:95442400-95443200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:95442400-95443200	Enhancers	NHDF-Ad	bronchial
19	chr9:95442400-95443400	Enhancers	Esophagus	oesophagus
20	chr9:95442400-95443600	Flanking Active TSS	NHEK	skin
21	chr9:95442600-95442800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:95442600-95443200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:95442600-95443200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:95442600-95443200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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