Variant report

Variant	rs72756457
Chromosome Location	chr9:95436706-95436707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:95436550-95436776	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr9:95436420-95436756	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr9:95436513-95436756	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95434221..95436789-chr9:95459934..95462232,2	MCF-7	breast:
2	chr9:95432262..95434312-chr9:95435831..95437633,3	K562	blood:
3	chr9:95434757..95437409-chr9:95526040..95528904,2	MCF-7	breast:
4	chr9:95436301..95439240-chr9:95442495..95445475,2	K562	blood:
5	chr9:95435216..95437864-chr9:95474368..95476596,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CENPP-1	chr9:95435148-95437038	NONHSAT133200

No data

Variant related genes	Relation type
IPPK	TF binding region
ENSG00000185963	Chromatin interaction
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34758505	0.82[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754433	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754487	0.92[AMR][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756424	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756472	1.00[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758521	0.82[ASN][1000 genomes]
rs72758523	0.82[ASN][1000 genomes]
rs72758524	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758525	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758526	0.82[ASN][1000 genomes]
rs72758532	0.82[ASN][1000 genomes]
rs72758535	0.82[ASN][1000 genomes]
rs72758536	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758539	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758540	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758542	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758543	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758544	0.82[ASN][1000 genomes]
rs72758545	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72758547	0.92[EUR][1000 genomes]
rs72758554	0.92[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95433400-95442800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:95433800-95437000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:95433800-95437400	Weak transcription	Stomach Mucosa	stomach
4	chr9:95433800-95441800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:95433800-95444000	Weak transcription	Fetal Brain Female	brain
6	chr9:95434000-95436800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:95434000-95437200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:95434000-95439200	Weak transcription	Primary T cells from cord blood	blood
9	chr9:95434000-95439200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:95434000-95439200	Weak transcription	Fetal Thymus	thymus
11	chr9:95434000-95439400	Weak transcription	HepG2	liver
12	chr9:95434000-95439800	Weak transcription	Brain Germinal Matrix	brain
13	chr9:95434000-95441800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr9:95434000-95441800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:95434000-95442400	Weak transcription	NHDF-Ad	bronchial
16	chr9:95434200-95438600	Weak transcription	K562	blood
17	chr9:95434200-95438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:95434200-95439400	Weak transcription	Right Atrium	heart
19	chr9:95434200-95441800	Weak transcription	Esophagus	oesophagus
20	chr9:95434200-95441800	Weak transcription	NHEK	skin
21	chr9:95434200-95442800	Weak transcription	Placenta	Placenta
22	chr9:95434400-95439200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:95435600-95437200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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