Variant report

Variant	rs72758540
Chromosome Location	chr9:95532127-95532128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95486744..95488866-chr9:95531575..95533845,2	MCF-7	breast:
2	chr9:95524574..95529988-chr9:95531032..95538459,18	K562	blood:
3	chr9:95481964..95484058-chr9:95531811..95534209,2	MCF-7	breast:
4	chr9:95532082..95533725-chr9:95537361..95539360,2	K562	blood:
5	chr9:95431564..95435112-chr9:95529358..95532432,3	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs17366134	0.84[EUR][1000 genomes]
rs2277165	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	0.84[EUR][1000 genomes]
rs41266685	0.84[EUR][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754437	0.84[EUR][1000 genomes]
rs72754440	0.84[EUR][1000 genomes]
rs72754442	0.84[EUR][1000 genomes]
rs72754443	0.84[EUR][1000 genomes]
rs72754444	0.84[EUR][1000 genomes]
rs72754445	0.84[EUR][1000 genomes]
rs72754446	0.84[EUR][1000 genomes]
rs72754447	0.84[EUR][1000 genomes]
rs72754450	0.81[EUR][1000 genomes]
rs72754452	0.84[EUR][1000 genomes]
rs72754457	0.84[EUR][1000 genomes]
rs72754461	0.84[EUR][1000 genomes]
rs72754463	0.84[EUR][1000 genomes]
rs72754465	0.84[EUR][1000 genomes]
rs72756414	0.84[EUR][1000 genomes]
rs72756415	0.84[EUR][1000 genomes]
rs72756418	0.84[EUR][1000 genomes]
rs72756423	0.81[EUR][1000 genomes]
rs72756424	0.83[ASN][1000 genomes]
rs72756425	0.81[EUR][1000 genomes]
rs72756426	0.84[EUR][1000 genomes]
rs72756427	0.84[EUR][1000 genomes]
rs72756431	0.88[EUR][1000 genomes]
rs72756433	0.92[EUR][1000 genomes]
rs72756437	0.88[EUR][1000 genomes]
rs72756438	0.92[EUR][1000 genomes]
rs72756440	0.92[EUR][1000 genomes]
rs72756441	0.92[EUR][1000 genomes]
rs72756442	0.92[EUR][1000 genomes]
rs72756443	0.92[EUR][1000 genomes]
rs72756444	0.88[EUR][1000 genomes]
rs72756446	0.92[EUR][1000 genomes]
rs72756447	0.92[EUR][1000 genomes]
rs72756448	0.92[EUR][1000 genomes]
rs72756452	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758525	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	1.00[AMR][1000 genomes]
rs72758552	1.00[AMR][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758558	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95528200-95532600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:95528200-95532600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95528200-95533400	Enhancers	Stomach Mucosa	stomach
4	chr9:95528400-95532400	Weak transcription	Psoas Muscle	Psoas
5	chr9:95528400-95532600	Weak transcription	Placenta	Placenta
6	chr9:95528600-95532200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr9:95528600-95532400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:95528600-95532400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:95528600-95532400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:95528600-95532400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:95528600-95532400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:95528600-95532600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:95528600-95532600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:95528600-95532600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:95528600-95532600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:95528600-95532600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:95528600-95532600	Weak transcription	Brain Anterior Caudate	brain
18	chr9:95528600-95532600	Weak transcription	Brain Hippocampus Middle	brain
19	chr9:95528600-95532600	Weak transcription	Fetal Thymus	thymus
20	chr9:95528600-95532800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr9:95528600-95532800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr9:95528600-95532800	Weak transcription	Small Intestine	intestine
23	chr9:95528600-95533000	Weak transcription	Thymus	Thymus
24	chr9:95528800-95532200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:95528800-95532200	Weak transcription	HMEC	breast
26	chr9:95528800-95532400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:95528800-95532400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:95528800-95532400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr9:95528800-95532400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr9:95528800-95532400	Weak transcription	Adipose Nuclei	Adipose
31	chr9:95528800-95532400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr9:95528800-95532400	Weak transcription	GM12878-XiMat	blood
33	chr9:95528800-95532600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:95528800-95532600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr9:95528800-95532600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr9:95528800-95532600	Weak transcription	Dnd41	blood
37	chr9:95528800-95536400	Weak transcription	HSMM	muscle
38	chr9:95529200-95533200	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr9:95529600-95532200	Weak transcription	K562	blood
40	chr9:95529800-95532600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:95529800-95533000	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr9:95529800-95533400	Enhancers	Gastric	stomach
43	chr9:95530000-95532400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr9:95530000-95532600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr9:95530200-95532600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:95530200-95532600	Weak transcription	Lung	lung
47	chr9:95530400-95532400	Enhancers	Duodenum Mucosa	Duodenum
48	chr9:95530400-95533000	Enhancers	Fetal Heart	heart
49	chr9:95530600-95533600	Enhancers	Primary B cells from cord blood	blood
50	chr9:95530800-95533400	Enhancers	Spleen	Spleen

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