Variant report

Variant	rs72758545
Chromosome Location	chr9:95544137-95544138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95526549..95528558-chr9:95543716..95545737,2	MCF-7	breast:
2	chr9:95501028..95504984-chr9:95544023..95547039,4	MCF-7	breast:
3	chr9:95527312..95529710-chr9:95541794..95545254,3	K562	blood:
4	chr9:95525056..95529006-chr9:95542998..95547069,6	MCF-7	breast:
5	chr9:95529431..95531463-chr9:95543130..95544900,2	MCF-7	breast:
6	chr9:95540552..95544510-chr9:95545450..95549411,3	K562	blood:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs17366134	0.84[EUR][1000 genomes]
rs2277165	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	0.84[EUR][1000 genomes]
rs41266685	0.84[EUR][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754445	0.84[EUR][1000 genomes]
rs72754446	0.84[EUR][1000 genomes]
rs72754447	0.84[EUR][1000 genomes]
rs72754450	0.81[EUR][1000 genomes]
rs72754452	0.84[EUR][1000 genomes]
rs72754457	0.84[EUR][1000 genomes]
rs72754461	0.84[EUR][1000 genomes]
rs72754463	0.84[EUR][1000 genomes]
rs72754465	0.84[EUR][1000 genomes]
rs72756414	0.84[EUR][1000 genomes]
rs72756415	0.84[EUR][1000 genomes]
rs72756418	0.84[EUR][1000 genomes]
rs72756423	0.81[EUR][1000 genomes]
rs72756424	0.83[ASN][1000 genomes]
rs72756425	0.81[EUR][1000 genomes]
rs72756426	0.84[EUR][1000 genomes]
rs72756427	0.84[EUR][1000 genomes]
rs72756431	0.88[EUR][1000 genomes]
rs72756433	0.92[EUR][1000 genomes]
rs72756437	0.88[EUR][1000 genomes]
rs72756438	0.92[EUR][1000 genomes]
rs72756440	0.92[EUR][1000 genomes]
rs72756441	0.92[EUR][1000 genomes]
rs72756442	0.92[EUR][1000 genomes]
rs72756443	0.92[EUR][1000 genomes]
rs72756444	0.88[EUR][1000 genomes]
rs72756446	0.92[EUR][1000 genomes]
rs72756447	0.92[EUR][1000 genomes]
rs72756448	0.92[EUR][1000 genomes]
rs72756452	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758525	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	1.00[AMR][1000 genomes]
rs72758552	1.00[AMR][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758558	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95543200-95545200	Enhancers	NHEK	skin
3	chr9:95543600-95545400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:95543600-95545800	Enhancers	HMEC	breast
5	chr9:95543800-95545400	Enhancers	Hela-S3	cervix
6	chr9:95543800-95545600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:95543800-95546000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr9:95544000-95544800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr9:95544000-95544800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr9:95544000-95545000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:95544000-95545000	Enhancers	Stomach Mucosa	stomach
12	chr9:95544000-95545400	Weak transcription	Esophagus	oesophagus

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