Variant report

Variant	rs72758542
Chromosome Location	chr9:95537361-95537362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95524574..95529988-chr9:95531032..95538459,18	K562	blood:
2	chr9:95532082..95533725-chr9:95537361..95539360,2	K562	blood:
3	chr9:95532566..95534480-chr9:95535486..95538375,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185963	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs17366134	0.84[EUR][1000 genomes]
rs2277165	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	0.84[EUR][1000 genomes]
rs41266685	0.84[EUR][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754440	0.84[EUR][1000 genomes]
rs72754442	0.84[EUR][1000 genomes]
rs72754443	0.84[EUR][1000 genomes]
rs72754444	0.84[EUR][1000 genomes]
rs72754445	0.84[EUR][1000 genomes]
rs72754446	0.84[EUR][1000 genomes]
rs72754447	0.84[EUR][1000 genomes]
rs72754450	0.81[EUR][1000 genomes]
rs72754452	0.84[EUR][1000 genomes]
rs72754457	0.84[EUR][1000 genomes]
rs72754461	0.84[EUR][1000 genomes]
rs72754463	0.84[EUR][1000 genomes]
rs72754465	0.84[EUR][1000 genomes]
rs72756414	0.84[EUR][1000 genomes]
rs72756415	0.84[EUR][1000 genomes]
rs72756418	0.84[EUR][1000 genomes]
rs72756423	0.81[EUR][1000 genomes]
rs72756424	0.83[ASN][1000 genomes]
rs72756425	0.81[EUR][1000 genomes]
rs72756426	0.84[EUR][1000 genomes]
rs72756427	0.84[EUR][1000 genomes]
rs72756431	0.88[EUR][1000 genomes]
rs72756433	0.92[EUR][1000 genomes]
rs72756437	0.88[EUR][1000 genomes]
rs72756438	0.92[EUR][1000 genomes]
rs72756440	0.92[EUR][1000 genomes]
rs72756441	0.92[EUR][1000 genomes]
rs72756442	0.92[EUR][1000 genomes]
rs72756443	0.92[EUR][1000 genomes]
rs72756444	0.88[EUR][1000 genomes]
rs72756446	0.92[EUR][1000 genomes]
rs72756447	0.92[EUR][1000 genomes]
rs72756448	0.92[EUR][1000 genomes]
rs72756452	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758525	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	1.00[AMR][1000 genomes]
rs72758552	1.00[AMR][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758558	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95533200-95537600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr9:95533200-95541200	Weak transcription	Left Ventricle	heart
3	chr9:95533400-95541200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:95533400-95543200	Weak transcription	Esophagus	oesophagus
5	chr9:95533600-95537800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:95533800-95537400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:95533800-95537800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:95534000-95537600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:95534000-95537800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:95536000-95537600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:95536200-95537400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:95536200-95537600	Enhancers	HMEC	breast
13	chr9:95536200-95537600	Enhancers	NHEK	skin
14	chr9:95536200-95538200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:95536400-95537400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:95536400-95537600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:95536600-95537400	Enhancers	Brain Anterior Caudate	brain
18	chr9:95536600-95537800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr9:95536600-95539000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:95536800-95537400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:95537000-95537400	Enhancers	Primary B cells from cord blood	blood
22	chr9:95537200-95543800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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