Variant report

Variant	rs72756443
Chromosome Location	chr9:95426895-95426896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95416446..95420766-chr9:95422078..95429343,12	MCF-7	breast:
2	chr9:95426803..95428983-chr9:95470405..95473212,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758505	0.84[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754487	0.92[AMR][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756472	0.89[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758524	1.00[EUR][1000 genomes]
rs72758525	1.00[EUR][1000 genomes]
rs72758536	0.96[EUR][1000 genomes]
rs72758539	0.92[EUR][1000 genomes]
rs72758540	0.92[EUR][1000 genomes]
rs72758542	0.92[EUR][1000 genomes]
rs72758543	0.92[EUR][1000 genomes]
rs72758545	0.92[EUR][1000 genomes]
rs72758547	0.92[EUR][1000 genomes]
rs72758554	0.92[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
2	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
3	chr9:95410800-95427000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:95411800-95427400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:95412000-95428400	Weak transcription	K562	blood
7	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
8	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
9	chr9:95413400-95427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:95417800-95431000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:95418000-95428800	Weak transcription	Fetal Lung	lung
12	chr9:95418000-95431000	Weak transcription	Psoas Muscle	Psoas
13	chr9:95418200-95428600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:95418600-95431000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:95420800-95427000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:95420800-95428200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:95420800-95428200	Weak transcription	Fetal Intestine Large	intestine
18	chr9:95420800-95428200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:95420800-95428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:95420800-95428400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr9:95420800-95429000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:95420800-95430800	Weak transcription	HSMMtube	muscle
23	chr9:95420800-95431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:95420800-95431000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:95421000-95428200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:95421000-95428200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr9:95421000-95428400	Weak transcription	Ovary	ovary
28	chr9:95421200-95428200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:95421200-95428400	Weak transcription	Aorta	Aorta
30	chr9:95421200-95430800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:95421200-95430800	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:95421200-95431000	Weak transcription	Colonic Mucosa	Colon
33	chr9:95421400-95428200	Weak transcription	Dnd41	blood
34	chr9:95421400-95428400	Weak transcription	A549	lung
35	chr9:95422200-95429800	Strong transcription	Fetal Intestine Small	intestine
36	chr9:95422400-95431200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:95422600-95427000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:95422600-95427200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr9:95422800-95428800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:95422800-95430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:95422800-95431000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:95422800-95431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:95423000-95427000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr9:95423000-95427000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr9:95423000-95428800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr9:95423400-95429800	Strong transcription	Fetal Stomach	stomach
47	chr9:95424000-95428200	Weak transcription	Osteobl	bone
48	chr9:95424000-95429800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr9:95424200-95427000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr9:95424200-95427200	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links