Variant report

Variant	rs72754485
Chromosome Location	chr9:95363275-95363276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95358665..95360582-chr9:95362854..95364983,2	K562	blood:
2	chr9:95267270..95270140-chr9:95362878..95365869,2	MCF-7	breast:
3	chr9:95363090..95364039-chr9:95380805..95381543,2	MCF-7	breast:

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17462606	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17519320	0.81[ASN][1000 genomes]
rs17519397	0.81[ASN][1000 genomes]
rs17519453	0.95[ASN][1000 genomes]
rs17519719	0.81[ASN][1000 genomes]
rs17519922	0.81[ASN][1000 genomes]
rs17591372	0.81[ASN][1000 genomes]
rs17591776	0.81[ASN][1000 genomes]
rs17591958	0.81[ASN][1000 genomes]
rs17592026	0.81[ASN][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34860658	0.95[ASN][1000 genomes]
rs3780348	0.81[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41278699	0.81[ASN][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72752417	0.82[ASN][1000 genomes]
rs72752422	0.82[ASN][1000 genomes]
rs72752435	0.91[ASN][1000 genomes]
rs72752467	0.91[ASN][1000 genomes]
rs72752471	0.81[ASN][1000 genomes]
rs72752472	0.81[ASN][1000 genomes]
rs72752474	0.95[ASN][1000 genomes]
rs72752484	0.81[ASN][1000 genomes]
rs72752485	0.81[ASN][1000 genomes]
rs72752486	0.81[ASN][1000 genomes]
rs72752492	0.81[ASN][1000 genomes]
rs72752493	0.81[ASN][1000 genomes]
rs72752497	0.81[ASN][1000 genomes]
rs72752502	0.81[ASN][1000 genomes]
rs72754403	0.81[ASN][1000 genomes]
rs72754404	0.81[ASN][1000 genomes]
rs72754408	0.81[ASN][1000 genomes]
rs72754410	0.81[ASN][1000 genomes]
rs72754411	0.81[ASN][1000 genomes]
rs72754415	0.81[ASN][1000 genomes]
rs72754418	0.81[ASN][1000 genomes]
rs72754420	0.81[ASN][1000 genomes]
rs72754421	0.81[ASN][1000 genomes]
rs72754423	0.81[ASN][1000 genomes]
rs72754425	0.81[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754487	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72758524	0.81[EUR][1000 genomes]
rs72758525	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95347800-95364000	Weak transcription	Left Ventricle	heart
3	chr9:95355800-95367000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:95360000-95364000	Enhancers	HepG2	liver
5	chr9:95360200-95370200	Weak transcription	Fetal Heart	heart
6	chr9:95360400-95366000	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:95360400-95366000	Enhancers	Fetal Muscle Leg	muscle
8	chr9:95361400-95363800	Enhancers	Fetal Stomach	stomach
9	chr9:95361600-95363400	Enhancers	Colon Smooth Muscle	Colon
10	chr9:95361600-95366000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:95362000-95363400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:95362000-95363800	Enhancers	Fetal Lung	lung
13	chr9:95362000-95364000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:95362000-95364000	Enhancers	Aorta	Aorta
15	chr9:95362000-95364200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:95362000-95364400	Enhancers	NHLF	lung
17	chr9:95362200-95363400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:95362200-95364200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr9:95362200-95364200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:95362200-95364200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr9:95362200-95364200	Enhancers	Esophagus	oesophagus
22	chr9:95362200-95364200	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr9:95362200-95364800	Enhancers	Placenta	Placenta
24	chr9:95362200-95365600	Weak transcription	Dnd41	blood
25	chr9:95362400-95363400	Enhancers	Colonic Mucosa	Colon
26	chr9:95362400-95364400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:95362400-95364400	Enhancers	HSMM	muscle
28	chr9:95362600-95363400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:95362600-95363400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr9:95362600-95363400	Enhancers	Fetal Thymus	thymus
31	chr9:95362600-95364000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:95362600-95364000	Enhancers	NH-A	brain
33	chr9:95362800-95363400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr9:95362800-95363400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:95362800-95364000	Enhancers	Ovary	ovary
36	chr9:95362800-95364800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:95362800-95364800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr9:95362800-95373000	Weak transcription	HMEC	breast
39	chr9:95363000-95363400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr9:95363000-95363400	Flanking Active TSS	NHDF-Ad	bronchial
41	chr9:95363000-95363800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr9:95363000-95363800	Weak transcription	Pancreas	Pancrea
43	chr9:95363000-95363800	Flanking Active TSS	Osteobl	bone
44	chr9:95363000-95370200	Weak transcription	Right Atrium	heart
45	chr9:95363000-95371400	Weak transcription	Right Ventricle	heart
46	chr9:95363200-95363400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr9:95363200-95363400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:95363200-95363400	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr9:95363200-95363400	Flanking Active TSS	HSMMtube	muscle
50	chr9:95363200-95363600	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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