Variant report

Variant	rs72758525
Chromosome Location	chr9:95524274-95524275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95502006..95503566-chr9:95523305..95525520,2	K562	blood:
2	chr9:95428069..95433526-chr9:95524054..95531235,7	MCF-7	breast:
3	chr9:95521437..95523022-chr9:95523421..95525145,2	MCF-7	breast:
4	chr9:95517729..95519725-chr9:95522515..95524617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs17365144	0.84[EUR][1000 genomes]
rs17366134	0.92[EUR][1000 genomes]
rs17462606	0.81[EUR][1000 genomes]
rs2277165	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	0.92[EUR][1000 genomes]
rs2277170	0.84[EUR][1000 genomes]
rs3802383	0.84[EUR][1000 genomes]
rs41266685	0.92[EUR][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41305495	0.84[EUR][1000 genomes]
rs41312236	0.84[EUR][1000 genomes]
rs72754430	0.92[EUR][1000 genomes]
rs72754434	0.92[EUR][1000 genomes]
rs72754436	0.92[EUR][1000 genomes]
rs72754437	0.92[EUR][1000 genomes]
rs72754440	0.92[EUR][1000 genomes]
rs72754442	0.92[EUR][1000 genomes]
rs72754443	0.92[EUR][1000 genomes]
rs72754444	0.92[EUR][1000 genomes]
rs72754445	0.92[EUR][1000 genomes]
rs72754446	0.92[EUR][1000 genomes]
rs72754447	0.92[EUR][1000 genomes]
rs72754450	0.88[EUR][1000 genomes]
rs72754452	0.92[EUR][1000 genomes]
rs72754457	0.92[EUR][1000 genomes]
rs72754461	0.92[EUR][1000 genomes]
rs72754463	0.92[EUR][1000 genomes]
rs72754464	0.85[EUR][1000 genomes]
rs72754465	0.92[EUR][1000 genomes]
rs72754470	0.84[EUR][1000 genomes]
rs72754477	0.84[EUR][1000 genomes]
rs72754480	0.81[EUR][1000 genomes]
rs72754482	0.84[EUR][1000 genomes]
rs72754483	0.84[EUR][1000 genomes]
rs72754485	0.81[EUR][1000 genomes]
rs72754489	0.84[EUR][1000 genomes]
rs72754491	0.84[EUR][1000 genomes]
rs72754493	0.84[EUR][1000 genomes]
rs72754499	0.84[EUR][1000 genomes]
rs72754501	0.84[EUR][1000 genomes]
rs72756404	0.84[EUR][1000 genomes]
rs72756405	0.84[EUR][1000 genomes]
rs72756406	0.84[EUR][1000 genomes]
rs72756408	0.84[EUR][1000 genomes]
rs72756410	0.84[EUR][1000 genomes]
rs72756414	0.92[EUR][1000 genomes]
rs72756415	0.92[EUR][1000 genomes]
rs72756416	0.85[EUR][1000 genomes]
rs72756418	0.92[EUR][1000 genomes]
rs72756423	0.88[EUR][1000 genomes]
rs72756424	0.83[ASN][1000 genomes]
rs72756425	0.88[EUR][1000 genomes]
rs72756426	0.92[EUR][1000 genomes]
rs72756427	0.92[EUR][1000 genomes]
rs72756431	0.96[EUR][1000 genomes]
rs72756433	1.00[EUR][1000 genomes]
rs72756437	0.96[EUR][1000 genomes]
rs72756438	1.00[EUR][1000 genomes]
rs72756440	1.00[EUR][1000 genomes]
rs72756441	1.00[EUR][1000 genomes]
rs72756442	1.00[EUR][1000 genomes]
rs72756443	1.00[EUR][1000 genomes]
rs72756444	0.96[EUR][1000 genomes]
rs72756446	1.00[EUR][1000 genomes]
rs72756447	1.00[EUR][1000 genomes]
rs72756448	1.00[EUR][1000 genomes]
rs72756452	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758539	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758540	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758542	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758543	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758545	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	1.00[AMR][1000 genomes]
rs72758552	1.00[AMR][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95512000-95525000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:95512400-95525200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:95512600-95525400	Weak transcription	A549	lung
4	chr9:95515600-95524800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:95518400-95525000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:95518400-95525200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:95518400-95525200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:95518600-95524800	Weak transcription	Fetal Lung	lung
9	chr9:95518600-95525200	Weak transcription	Fetal Intestine Large	intestine
10	chr9:95519200-95525200	Enhancers	Fetal Thymus	thymus
11	chr9:95519400-95525200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:95520200-95524400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:95520200-95524600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:95520200-95524800	Weak transcription	Psoas Muscle	Psoas
15	chr9:95520400-95525600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:95520400-95526000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:95521400-95525000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr9:95521400-95525000	Enhancers	Thymus	Thymus
19	chr9:95521400-95525200	Enhancers	Brain Hippocampus Middle	brain
20	chr9:95521400-95525400	Enhancers	Brain Substantia Nigra	brain
21	chr9:95521600-95524800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr9:95521600-95524800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr9:95521600-95524800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr9:95521600-95524800	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:95521600-95524800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr9:95521600-95525000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr9:95521600-95525000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:95521600-95525200	Enhancers	Primary T cells fromperipheralblood	blood
29	chr9:95521600-95525200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr9:95521600-95525200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:95521600-95525200	Enhancers	Right Ventricle	heart
32	chr9:95521600-95525400	Enhancers	Primary B cells from peripheral blood	blood
33	chr9:95521600-95525400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr9:95521600-95525600	Enhancers	Fetal Heart	heart
35	chr9:95521800-95524600	Enhancers	Spleen	Spleen
36	chr9:95521800-95524800	Enhancers	Adipose Nuclei	Adipose
37	chr9:95521800-95524800	Enhancers	Brain Cingulate Gyrus	brain
38	chr9:95521800-95524800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:95521800-95524800	Enhancers	Esophagus	oesophagus
40	chr9:95521800-95524800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr9:95521800-95525000	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr9:95521800-95525000	Enhancers	Right Atrium	heart
43	chr9:95521800-95525200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:95521800-95525200	Enhancers	Pancreas	Pancrea
45	chr9:95521800-95525400	Enhancers	Left Ventricle	heart
46	chr9:95521800-95525400	Enhancers	Ovary	ovary
47	chr9:95521800-95525800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:95521800-95525800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr9:95521800-95526000	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr9:95522000-95524600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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