Variant report

Variant	rs72758552
Chromosome Location	chr9:95554249-95554250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95492835..95493383-chr9:95554018..95554646,2	MCF-7	breast:
2	chr9:95478444..95479282-chr9:95553871..95554503,2	MCF-7	breast:
3	chr9:95548519..95551423-chr9:95551697..95555504,3	K562	blood:
4	chr9:95548536..95551423-chr9:95551697..95554622,2	K562	blood:
5	chr9:95490525..95493250-chr9:95553271..95556888,4	MCF-7	breast:
6	chr9:95431446..95434360-chr9:95553227..95554835,2	K562	blood:
7	chr9:95477589..95479745-chr9:95552939..95554698,2	K562	blood:

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs41273374	0.83[AMR][1000 genomes]
rs72756424	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes]
rs72756478	0.83[AMR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758519	0.83[AMR][1000 genomes]
rs72758521	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758523	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758524	1.00[AMR][1000 genomes]
rs72758525	1.00[AMR][1000 genomes]
rs72758526	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758532	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758535	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758536	0.92[AMR][1000 genomes]
rs72758539	1.00[AMR][1000 genomes]
rs72758540	1.00[AMR][1000 genomes]
rs72758542	1.00[AMR][1000 genomes]
rs72758543	1.00[AMR][1000 genomes]
rs72758544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72758545	1.00[AMR][1000 genomes]
rs72758547	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72758549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72758554	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430081	chr9:95502571-95568110	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv982595	chr9:95551536-95561640	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95541400-95558600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95553200-95556600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:95553600-95557400	Weak transcription	Liver	Liver

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