Variant report

Variant	rs2277170
Chromosome Location	chr9:95396712-95396713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95090405..95091041-chr9:95396676..95397422,4	K562	blood:
2	chr9:95391876..95393379-chr9:95395361..95397052,2	K562	blood:
3	chr9:95268173..95269920-chr9:95396412..95398691,2	K562	blood:
4	chr9:95395631..95397525-chr9:95432651..95435112,2	MCF-7	breast:
5	chr9:95262992..95264581-chr9:95394509..95397028,2	MCF-7	breast:
6	chr9:95396399..95398698-chr9:95432451..95434302,2	MCF-7	breast:
7	chr9:94896325..94896865-chr9:95396711..95397222,2	K562	blood:
8	chr9:95396712..95397637-chr9:95468536..95469414,2	K562	blood:
9	chr9:94902262..94903203-chr9:95396707..95397642,2	K562	blood:
10	chr9:95396120..95399108-chr9:95405492..95407819,2	MCF-7	breast:
11	chr9:95264020..95264999-chr9:95396557..95397624,7	MCF-7	breast:
12	chr9:95089411..95090139-chr9:95396708..95397599,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs17365144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17366134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462606	1.00[CEU][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17519719	1.00[MKK][hapmap]
rs17591776	1.00[JPT][hapmap]
rs2277165	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758505	0.84[ASN][1000 genomes]
rs3780348	0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap]
rs3802383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72754487	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756472	0.89[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758524	0.84[EUR][1000 genomes]
rs72758525	0.84[EUR][1000 genomes]
rs72758536	0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:95371800-95399000	Weak transcription	Aorta	Aorta
3	chr9:95371800-95407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr9:95373200-95399200	Weak transcription	Small Intestine	intestine
6	chr9:95375200-95405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:95375400-95403000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:95378200-95403600	Weak transcription	Fetal Brain Male	brain
9	chr9:95380000-95397200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:95380800-95400600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:95380800-95429000	Weak transcription	Stomach Mucosa	stomach
12	chr9:95381400-95402800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:95382800-95397000	Weak transcription	Fetal Heart	heart
14	chr9:95384800-95421600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:95385000-95396800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:95385800-95401800	Strong transcription	Osteobl	bone
17	chr9:95389000-95398600	Strong transcription	A549	lung
18	chr9:95390000-95397400	Strong transcription	NH-A	brain
19	chr9:95390200-95411200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:95391200-95396800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:95391800-95410600	Strong transcription	Left Ventricle	heart
22	chr9:95391800-95421000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:95392000-95407200	Strong transcription	NHLF	lung
24	chr9:95392000-95414600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr9:95392000-95419600	Strong transcription	Primary T cells from cord blood	blood
26	chr9:95392200-95397800	Strong transcription	HSMMtube	muscle
27	chr9:95392200-95407600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr9:95392200-95410800	Strong transcription	Brain Anterior Caudate	brain
29	chr9:95392400-95396800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:95392400-95396800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:95392400-95396800	Strong transcription	Liver	Liver
32	chr9:95392400-95420800	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr9:95392600-95396800	Strong transcription	Brain Hippocampus Middle	brain
34	chr9:95392600-95403200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr9:95392600-95407800	Strong transcription	Brain Germinal Matrix	brain
36	chr9:95392800-95397200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:95393200-95397000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:95393200-95403400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:95393200-95405600	Strong transcription	Fetal Intestine Small	intestine
40	chr9:95393200-95407600	Strong transcription	Lung	lung
41	chr9:95393200-95408400	Strong transcription	Fetal Intestine Large	intestine
42	chr9:95393200-95412000	Strong transcription	Right Ventricle	heart
43	chr9:95393200-95421200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:95393200-95421600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr9:95393600-95396800	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:95393600-95399600	Strong transcription	HUVEC	blood vessel
47	chr9:95393600-95405400	Strong transcription	Esophagus	oesophagus
48	chr9:95393600-95407200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:95393600-95407600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:95393600-95407600	Strong transcription	Spleen	Spleen

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