Variant report

Variant	rs72756447
Chromosome Location	chr9:95430676-95430677
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95086363..95089965-chr9:95430183..95433166,4	MCF-7	breast:
2	chr2:32581210..32582813-chr9:95430213..95432682,2	MCF-7	breast:
3	chr9:95429103..95431144-chr9:95506974..95509653,2	MCF-7	breast:
4	chr9:95055398..95057147-chr9:95429877..95432258,2	K562	blood:
5	chr9:95086180..95088905-chr9:95429811..95432518,3	K562	blood:
6	chr9:95429562..95431238-chr9:95432570..95434492,2	K562	blood:
7	chr9:95429167..95431918-chr9:95447874..95449583,2	MCF-7	breast:
8	chr9:95428069..95433526-chr9:95524054..95531235,7	MCF-7	breast:
9	chr9:95386831..95389535-chr9:95429656..95431675,4	MCF-7	breast:
10	chr9:95402126..95404121-chr9:95429330..95432541,3	MCF-7	breast:
11	chr9:95055089..95057841-chr9:95428925..95431600,2	MCF-7	breast:
12	chr9:95396017..95401096-chr9:95429349..95431956,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000196305	Chromatin interaction
ENSG00000185963	Chromatin interaction
ENSG00000127080	Chromatin interaction
ENSG00000198000	Chromatin interaction
ENSG00000115760	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758505	0.84[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72754487	0.92[AMR][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756472	0.89[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758524	1.00[EUR][1000 genomes]
rs72758525	1.00[EUR][1000 genomes]
rs72758536	0.96[EUR][1000 genomes]
rs72758539	0.92[EUR][1000 genomes]
rs72758540	0.92[EUR][1000 genomes]
rs72758542	0.92[EUR][1000 genomes]
rs72758543	0.92[EUR][1000 genomes]
rs72758545	0.92[EUR][1000 genomes]
rs72758547	0.92[EUR][1000 genomes]
rs72758554	0.92[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95409800-95431000	Weak transcription	Fetal Kidney	kidney
2	chr9:95411000-95431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95412000-95431000	Weak transcription	Fetal Brain Male	brain
4	chr9:95412400-95431200	Weak transcription	Small Intestine	intestine
5	chr9:95417800-95431000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:95418000-95431000	Weak transcription	Psoas Muscle	Psoas
7	chr9:95418600-95431000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:95420800-95430800	Weak transcription	HSMMtube	muscle
9	chr9:95420800-95431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:95420800-95431000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:95421200-95430800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr9:95421200-95430800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:95421200-95431000	Weak transcription	Colonic Mucosa	Colon
14	chr9:95422400-95431200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:95422800-95430800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:95422800-95431000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:95422800-95431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:95426200-95431000	Weak transcription	Primary B cells from cord blood	blood
19	chr9:95426600-95430800	Weak transcription	HepG2	liver
20	chr9:95427200-95431000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:95427400-95430800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:95427400-95431000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:95427400-95431000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:95427600-95430800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:95427600-95430800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:95427600-95430800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr9:95427600-95431000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:95427600-95431000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr9:95427600-95431000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:95427800-95430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:95427800-95431000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr9:95428000-95431200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:95428400-95430800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:95428600-95430800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:95428600-95430800	Weak transcription	Fetal Heart	heart
36	chr9:95428600-95431000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:95428800-95430800	Weak transcription	Primary T cells from cord blood	blood
38	chr9:95429000-95431000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr9:95429200-95430800	Weak transcription	K562	blood
40	chr9:95429400-95430800	Weak transcription	Adipose Nuclei	Adipose
41	chr9:95429400-95430800	Weak transcription	Right Atrium	heart
42	chr9:95429400-95431000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:95429400-95431000	Weak transcription	Ovary	ovary
44	chr9:95429400-95431000	Weak transcription	Pancreas	Pancrea
45	chr9:95429400-95431400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr9:95429600-95430800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:95429600-95430800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr9:95429600-95431000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr9:95429600-95431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:95429600-95431000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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