Variant report

Variant	rs72754499
Chromosome Location	chr9:95383056-95383057
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95379288..95383213-chr9:95431051..95434876,7	MCF-7	breast:
2	chr9:95371374..95373769-chr9:95381769..95384696,2	K562	blood:
3	chr9:95371816..95375091-chr9:95382914..95385220,3	K562	blood:

Variant related genes	Relation type
ENSG00000188312	Chromatin interaction
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17519320	0.95[ASN][1000 genomes]
rs17519397	0.95[ASN][1000 genomes]
rs17519453	0.81[ASN][1000 genomes]
rs17519719	0.95[ASN][1000 genomes]
rs17519922	0.95[ASN][1000 genomes]
rs17591007	0.90[ASN][1000 genomes]
rs17591372	0.95[ASN][1000 genomes]
rs17591776	0.95[ASN][1000 genomes]
rs17591958	0.95[ASN][1000 genomes]
rs17592026	0.95[ASN][1000 genomes]
rs2236529	0.90[ASN][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34758505	0.89[ASN][1000 genomes]
rs34860658	0.81[ASN][1000 genomes]
rs3758228	0.90[ASN][1000 genomes]
rs3780348	0.95[ASN][1000 genomes]
rs3780349	0.90[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41278699	0.95[ASN][1000 genomes]
rs41301527	0.90[ASN][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752442	0.85[ASN][1000 genomes]
rs72752443	0.85[ASN][1000 genomes]
rs72752444	0.85[ASN][1000 genomes]
rs72752445	0.90[ASN][1000 genomes]
rs72752446	0.90[ASN][1000 genomes]
rs72752449	0.90[ASN][1000 genomes]
rs72752453	0.90[ASN][1000 genomes]
rs72752454	0.90[ASN][1000 genomes]
rs72752457	0.90[ASN][1000 genomes]
rs72752458	0.90[ASN][1000 genomes]
rs72752460	0.90[ASN][1000 genomes]
rs72752463	0.90[ASN][1000 genomes]
rs72752469	0.90[ASN][1000 genomes]
rs72752471	0.95[ASN][1000 genomes]
rs72752472	0.95[ASN][1000 genomes]
rs72752474	0.81[ASN][1000 genomes]
rs72752475	0.90[ASN][1000 genomes]
rs72752477	0.90[ASN][1000 genomes]
rs72752479	0.90[ASN][1000 genomes]
rs72752482	0.90[ASN][1000 genomes]
rs72752483	0.90[ASN][1000 genomes]
rs72752484	0.95[ASN][1000 genomes]
rs72752485	0.95[ASN][1000 genomes]
rs72752486	0.95[ASN][1000 genomes]
rs72752492	0.95[ASN][1000 genomes]
rs72752493	0.95[ASN][1000 genomes]
rs72752497	0.95[ASN][1000 genomes]
rs72752502	0.95[ASN][1000 genomes]
rs72754403	0.95[ASN][1000 genomes]
rs72754404	0.95[ASN][1000 genomes]
rs72754408	0.95[ASN][1000 genomes]
rs72754410	0.95[ASN][1000 genomes]
rs72754411	0.95[ASN][1000 genomes]
rs72754415	0.95[ASN][1000 genomes]
rs72754418	0.95[ASN][1000 genomes]
rs72754420	0.95[ASN][1000 genomes]
rs72754421	0.95[ASN][1000 genomes]
rs72754423	0.95[ASN][1000 genomes]
rs72754425	0.95[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754487	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758524	0.84[EUR][1000 genomes]
rs72758525	0.84[EUR][1000 genomes]
rs72758536	0.81[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95363400-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:95370600-95394000	Weak transcription	Psoas Muscle	Psoas
3	chr9:95371400-95398200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:95371800-95399000	Weak transcription	Aorta	Aorta
5	chr9:95371800-95407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:95372000-95394200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:95372400-95383400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:95372600-95383200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:95372800-95383200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:95372800-95384200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:95373000-95383200	Strong transcription	Brain Hippocampus Middle	brain
12	chr9:95373000-95383400	Strong transcription	Brain Germinal Matrix	brain
13	chr9:95373000-95384200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:95373000-95384200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr9:95373000-95384200	Strong transcription	Primary T cells from cord blood	blood
16	chr9:95373000-95384200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:95373000-95384400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:95373000-95384800	Strong transcription	Dnd41	blood
19	chr9:95373000-95421200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr9:95373200-95383200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr9:95373200-95383400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:95373200-95384000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:95373200-95388000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr9:95373200-95399200	Weak transcription	Small Intestine	intestine
25	chr9:95373600-95383400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:95373600-95383400	Strong transcription	Thymus	Thymus
27	chr9:95373800-95383400	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr9:95373800-95384000	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:95373800-95384400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr9:95374000-95383200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr9:95374000-95383400	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr9:95374000-95384400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:95374000-95394000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:95374200-95384000	Strong transcription	GM12878-XiMat	blood
35	chr9:95374800-95384200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:95375200-95405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:95375400-95383200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:95375400-95383200	Strong transcription	NHEK	skin
39	chr9:95375400-95403000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr9:95375600-95383200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr9:95376400-95383400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:95376400-95384200	Enhancers	Ovary	ovary
43	chr9:95377600-95388000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:95377800-95384800	Strong transcription	Osteobl	bone
45	chr9:95378000-95386000	Weak transcription	A549	lung
46	chr9:95378200-95393800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:95378200-95394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:95378200-95394000	Weak transcription	Brain Substantia Nigra	brain
49	chr9:95378200-95394200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:95378200-95403600	Weak transcription	Fetal Brain Male	brain

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