Variant report

Variant	rs72754410
Chromosome Location	chr9:95237457-95237458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95227131..95229911-chr9:95235487..95238309,2	K562	blood:
2	chr9:95236453..95239655-chr9:95242401..95247009,4	K562	blood:
3	chr9:95236896..95239827-chr9:95240100..95242335,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ECM2-1	chr9:95237435-95238025	NONHSAT133190

Variant related genes	Relation type
ENSG00000106819	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs17365144	0.95[ASN][1000 genomes]
rs17519320	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519397	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519453	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17519719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17519922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591007	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17591372	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591776	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17591958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17592026	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17678735	1.00[AMR][1000 genomes]
rs2044540	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2236529	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28365880	1.00[AMR][1000 genomes]
rs34758505	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34860658	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758228	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3758230	1.00[AMR][1000 genomes]
rs3758232	1.00[AMR][1000 genomes]
rs3780348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3802383	0.85[ASN][1000 genomes]
rs41276835	1.00[AMR][1000 genomes]
rs41277647	1.00[AMR][1000 genomes]
rs41277739	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41278699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41297183	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41301527	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs41305495	0.95[ASN][1000 genomes]
rs41312230	1.00[AMR][1000 genomes]
rs41312236	0.95[ASN][1000 genomes]
rs4298540	1.00[AMR][1000 genomes]
rs72750463	1.00[AMR][1000 genomes]
rs72750465	1.00[AMR][1000 genomes]
rs72750466	1.00[AMR][1000 genomes]
rs72750468	1.00[AMR][1000 genomes]
rs72750469	1.00[AMR][1000 genomes]
rs72750472	1.00[AMR][1000 genomes]
rs72750474	1.00[AMR][1000 genomes]
rs72750478	1.00[AMR][1000 genomes]
rs72750479	1.00[AMR][1000 genomes]
rs72750482	1.00[AMR][1000 genomes]
rs72750483	1.00[AMR][1000 genomes]
rs72750487	1.00[AMR][1000 genomes]
rs72750490	1.00[AMR][1000 genomes]
rs72750491	0.93[AMR][1000 genomes]
rs72750493	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72750494	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72750496	1.00[AMR][1000 genomes]
rs72750498	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72750500	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72750501	1.00[AMR][1000 genomes]
rs72750502	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752403	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752404	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752405	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752406	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752411	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752417	1.00[AMR][1000 genomes]
rs72752419	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752422	1.00[AMR][1000 genomes]
rs72752425	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752427	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752431	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72752435	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72752442	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72752443	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72752444	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs72752445	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752446	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752449	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752453	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752454	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752457	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752458	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752460	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752463	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752467	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72752469	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72752471	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752472	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752474	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72752475	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752477	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752479	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752482	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752483	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72752484	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752485	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752486	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752492	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752493	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752497	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72752502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72754429	0.89[ASN][1000 genomes]
rs72754430	0.89[ASN][1000 genomes]
rs72754434	0.95[ASN][1000 genomes]
rs72754436	0.81[ASN][1000 genomes]
rs72754437	0.95[ASN][1000 genomes]
rs72754440	0.95[ASN][1000 genomes]
rs72754442	0.95[ASN][1000 genomes]
rs72754443	0.95[ASN][1000 genomes]
rs72754444	0.95[ASN][1000 genomes]
rs72754445	0.95[ASN][1000 genomes]
rs72754446	0.95[ASN][1000 genomes]
rs72754447	0.89[ASN][1000 genomes]
rs72754450	0.95[ASN][1000 genomes]
rs72754452	0.95[ASN][1000 genomes]
rs72754457	0.95[ASN][1000 genomes]
rs72754461	0.95[ASN][1000 genomes]
rs72754463	0.95[ASN][1000 genomes]
rs72754464	0.81[ASN][1000 genomes]
rs72754465	0.95[ASN][1000 genomes]
rs72754470	0.95[ASN][1000 genomes]
rs72754477	0.95[ASN][1000 genomes]
rs72754480	0.81[ASN][1000 genomes]
rs72754482	0.95[ASN][1000 genomes]
rs72754483	0.95[ASN][1000 genomes]
rs72754485	0.81[ASN][1000 genomes]
rs72754487	0.81[ASN][1000 genomes]
rs72754489	0.95[ASN][1000 genomes]
rs72754491	0.95[ASN][1000 genomes]
rs72754493	0.84[ASN][1000 genomes]
rs72754496	0.95[ASN][1000 genomes]
rs72754499	0.95[ASN][1000 genomes]
rs72754501	0.95[ASN][1000 genomes]
rs72756404	0.84[ASN][1000 genomes]
rs72756405	0.84[ASN][1000 genomes]
rs72756406	0.84[ASN][1000 genomes]
rs72756448	0.84[ASN][1000 genomes]
rs921122	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv893573	chr9:94974188-95355719	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1047337	chr9:95105638-95347484	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1049599	chr9:95170139-95265558	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95219000-95241600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:95220200-95242400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:95227000-95241200	Weak transcription	Ovary	ovary
4	chr9:95227400-95240800	Weak transcription	Left Ventricle	heart
5	chr9:95227400-95240800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:95227600-95239000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:95227600-95239400	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:95230600-95242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:95230800-95243400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:95231000-95241200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:95231800-95268800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:95232200-95241200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:95232200-95242600	Weak transcription	K562	blood
14	chr9:95235400-95251600	Weak transcription	Psoas Muscle	Psoas
15	chr9:95235600-95240400	Weak transcription	Fetal Stomach	stomach
16	chr9:95236000-95238600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:95236400-95241600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr9:95236600-95238400	Weak transcription	Aorta	Aorta
19	chr9:95236600-95240800	Weak transcription	Fetal Muscle Leg	muscle

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