Variant report

Variant	rs72754483
Chromosome Location	chr9:95359093-95359094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr9:95359070-95359778	MCF-7	breast:	n/a	n/a
2	GATA3	chr9:95359085-95359596	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr9:95359062-95359666	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:95357901..95361208-chr9:95361655..95366316,4	K562	blood:
2	chr9:95358665..95360582-chr9:95362854..95364983,2	K562	blood:
3	chr9:95086096..95089995-chr9:95356601..95360082,3	K562	blood:
4	chr9:95354681..95356667-chr9:95358553..95361349,2	K562	blood:

Variant related genes	Relation type
CENPP	TF binding region
ENSG00000188312	Chromatin interaction
ENSG00000198000	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs17365144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366134	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17462606	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17519320	0.95[ASN][1000 genomes]
rs17519397	0.95[ASN][1000 genomes]
rs17519453	0.81[ASN][1000 genomes]
rs17519719	0.95[ASN][1000 genomes]
rs17519922	0.95[ASN][1000 genomes]
rs17591007	0.90[ASN][1000 genomes]
rs17591372	0.95[ASN][1000 genomes]
rs17591776	0.95[ASN][1000 genomes]
rs17591958	0.95[ASN][1000 genomes]
rs17592026	0.95[ASN][1000 genomes]
rs2236529	0.90[ASN][1000 genomes]
rs2277165	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2277167	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2277170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34758505	0.89[ASN][1000 genomes]
rs34860658	0.81[ASN][1000 genomes]
rs3758228	0.90[ASN][1000 genomes]
rs3780348	0.95[ASN][1000 genomes]
rs3780349	0.90[ASN][1000 genomes]
rs3802383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41266685	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs41273374	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs41278699	0.95[ASN][1000 genomes]
rs41301527	0.90[ASN][1000 genomes]
rs41305495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41312236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750499	0.83[AMR][1000 genomes]
rs72752442	0.85[ASN][1000 genomes]
rs72752443	0.85[ASN][1000 genomes]
rs72752444	0.85[ASN][1000 genomes]
rs72752445	0.90[ASN][1000 genomes]
rs72752446	0.90[ASN][1000 genomes]
rs72752449	0.90[ASN][1000 genomes]
rs72752453	0.90[ASN][1000 genomes]
rs72752454	0.90[ASN][1000 genomes]
rs72752457	0.90[ASN][1000 genomes]
rs72752458	0.90[ASN][1000 genomes]
rs72752460	0.90[ASN][1000 genomes]
rs72752463	0.90[ASN][1000 genomes]
rs72752469	0.90[ASN][1000 genomes]
rs72752471	0.95[ASN][1000 genomes]
rs72752472	0.95[ASN][1000 genomes]
rs72752474	0.81[ASN][1000 genomes]
rs72752475	0.90[ASN][1000 genomes]
rs72752477	0.90[ASN][1000 genomes]
rs72752479	0.90[ASN][1000 genomes]
rs72752482	0.90[ASN][1000 genomes]
rs72752483	0.90[ASN][1000 genomes]
rs72752484	0.95[ASN][1000 genomes]
rs72752485	0.95[ASN][1000 genomes]
rs72752486	0.95[ASN][1000 genomes]
rs72752492	0.95[ASN][1000 genomes]
rs72752493	0.95[ASN][1000 genomes]
rs72752497	0.95[ASN][1000 genomes]
rs72752502	0.95[ASN][1000 genomes]
rs72754403	0.95[ASN][1000 genomes]
rs72754404	0.95[ASN][1000 genomes]
rs72754408	0.95[ASN][1000 genomes]
rs72754410	0.95[ASN][1000 genomes]
rs72754411	0.95[ASN][1000 genomes]
rs72754415	0.95[ASN][1000 genomes]
rs72754418	0.95[ASN][1000 genomes]
rs72754420	0.95[ASN][1000 genomes]
rs72754421	0.95[ASN][1000 genomes]
rs72754423	0.95[ASN][1000 genomes]
rs72754425	0.95[ASN][1000 genomes]
rs72754429	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754430	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754433	0.92[AMR][1000 genomes]
rs72754434	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754435	0.92[AMR][1000 genomes]
rs72754436	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754437	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754440	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754442	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754443	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754444	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754445	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754446	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754447	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72754450	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754452	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754461	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754463	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754464	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754465	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754480	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754485	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754487	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72754489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754493	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72754496	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72754501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72756403	1.00[AMR][1000 genomes]
rs72756404	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756414	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756416	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756423	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756424	1.00[AMR][1000 genomes]
rs72756425	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72756426	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756427	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756431	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756433	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756437	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756438	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756440	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756441	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756442	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756443	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756444	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72756446	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756447	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72756448	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72756452	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756455	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756457	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756458	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756459	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756460	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756462	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756464	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756465	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756467	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756468	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756469	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756471	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72756472	0.83[ASN][1000 genomes]
rs72756478	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756483	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756486	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756489	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756497	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756498	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72756500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758504	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758505	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758508	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758510	0.83[AMR][1000 genomes]
rs72758519	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72758524	0.84[EUR][1000 genomes]
rs72758525	0.84[EUR][1000 genomes]
rs72758536	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052846	chr9:95291909-95366109	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95347600-95365800	Weak transcription	Thymus	Thymus
2	chr9:95347800-95364000	Weak transcription	Left Ventricle	heart
3	chr9:95353000-95362000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:95353200-95359400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:95353200-95360600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:95354000-95362200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:95355600-95360400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:95355600-95360400	Weak transcription	Lung	lung
9	chr9:95355600-95360400	Weak transcription	Right Atrium	heart
10	chr9:95355600-95360400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:95355600-95362000	Weak transcription	Aorta	Aorta
12	chr9:95355600-95362800	Weak transcription	Right Ventricle	heart
13	chr9:95355800-95367000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr9:95356200-95362600	Weak transcription	Fetal Thymus	thymus
15	chr9:95356400-95359800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:95356400-95360200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:95356400-95360200	Weak transcription	NHDF-Ad	bronchial
18	chr9:95356400-95360600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:95356400-95362000	Weak transcription	HSMMtube	muscle
20	chr9:95356400-95362400	Weak transcription	HSMM	muscle
21	chr9:95356600-95359200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:95356600-95359200	Weak transcription	Fetal Lung	lung
23	chr9:95356600-95360000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:95356600-95360400	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:95356600-95360400	Weak transcription	Ovary	ovary
26	chr9:95356600-95360600	Weak transcription	Fetal Stomach	stomach
27	chr9:95356800-95360000	Weak transcription	Colon Smooth Muscle	Colon
28	chr9:95356800-95360400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:95357800-95359200	Weak transcription	Liver	Liver
30	chr9:95357800-95360000	Weak transcription	HepG2	liver
31	chr9:95358400-95361000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:95358600-95360600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr9:95358800-95359600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr9:95359000-95360400	Weak transcription	Placenta	Placenta

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