Variant report

Variant	rs3740088
Chromosome Location	chr10:45433145-45433146
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11593043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596745	0.97[ASN][1000 genomes]
rs11597898	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1332628	1.00[JPT][hapmap]
rs2297493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2297494	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740089	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61854007	0.95[ASN][1000 genomes]
rs61854008	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078924	0.97[ASN][1000 genomes]
rs72780643	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72780645	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872208	0.94[MEX][hapmap];0.83[TSI][hapmap]
rs949607	1.00[JPT][hapmap]
rs952956	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
2	chr10:45427600-45433600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:45427800-45433200	Enhancers	Adipose Nuclei	Adipose
4	chr10:45427800-45433200	Enhancers	Pancreas	Pancrea
5	chr10:45428000-45433200	Enhancers	Fetal Heart	heart
6	chr10:45428000-45433400	Enhancers	Placenta	Placenta
7	chr10:45428000-45436600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:45428400-45436800	Enhancers	HepG2	liver
9	chr10:45428800-45435400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:45429800-45433200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:45430000-45433400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:45431200-45433400	Enhancers	Brain Hippocampus Middle	brain
13	chr10:45431200-45453200	Weak transcription	Gastric	stomach
14	chr10:45431400-45435800	Weak transcription	Liver	Liver
15	chr10:45431600-45434000	Weak transcription	Colonic Mucosa	Colon
16	chr10:45431600-45436000	Weak transcription	Stomach Mucosa	stomach
17	chr10:45432000-45434600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:45432200-45433200	Weak transcription	Left Ventricle	heart
19	chr10:45432200-45434400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:45432400-45433200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:45432400-45434200	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr10:45432400-45434200	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr10:45432600-45433200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:45432600-45434200	Weak transcription	NHDF-Ad	bronchial
25	chr10:45433000-45433200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:45433000-45433200	Enhancers	Brain Anterior Caudate	brain
27	chr10:45433000-45433200	Enhancers	Duodenum Mucosa	Duodenum
28	chr10:45433000-45433200	Enhancers	Skeletal Muscle Female	skeletal muscle

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