Variant report

Variant	rs61854007
Chromosome Location	chr10:45425745-45425746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45424948..45427085-chr10:45472059..45474210,2	K562	blood:
2	chr10:45419232..45422212-chr10:45424408..45426713,2	K562	blood:
3	chr10:45424948..45428447-chr10:45472059..45474990,3	K562	blood:
4	chr10:45423081..45426439-chr10:45487238..45490931,4	K562	blood:

Variant related genes	Relation type
ENSG00000165507	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11593043	0.95[ASN][1000 genomes]
rs11596745	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11597898	0.90[ASN][1000 genomes]
rs2297493	0.95[ASN][1000 genomes]
rs2297494	0.95[ASN][1000 genomes]
rs3740088	0.95[ASN][1000 genomes]
rs3740089	0.95[ASN][1000 genomes]
rs61854008	0.95[ASN][1000 genomes]
rs7078924	0.97[ASN][1000 genomes]
rs72780643	0.95[ASN][1000 genomes]
rs72780645	0.95[ASN][1000 genomes]
rs872208	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv818757	chr10:45420076-45431321	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45410200-45430400	Weak transcription	Gastric	stomach
2	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
4	chr10:45420400-45428000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr10:45420400-45428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:45421000-45427800	Weak transcription	Right Ventricle	heart
7	chr10:45421600-45428000	Weak transcription	Fetal Heart	heart
8	chr10:45422600-45427800	Weak transcription	Spleen	Spleen
9	chr10:45423000-45428200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:45423200-45427800	Weak transcription	Adipose Nuclei	Adipose
11	chr10:45423200-45428600	Weak transcription	Esophagus	oesophagus
12	chr10:45423400-45427800	Weak transcription	Pancreas	Pancrea
13	chr10:45423400-45427800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:45423400-45428000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr10:45423400-45428000	Weak transcription	Liver	Liver
16	chr10:45423400-45428000	Weak transcription	Lung	lung
17	chr10:45423400-45428000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr10:45423600-45427600	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:45423600-45428000	Weak transcription	Fetal Intestine Large	intestine
20	chr10:45424800-45425800	Enhancers	Colonic Mucosa	Colon
21	chr10:45425000-45425800	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr10:45425400-45429800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:45425600-45427800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:45425600-45428000	Weak transcription	Duodenum Mucosa	Duodenum

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