Variant report

Variant	rs374059377
Chromosome Location	chr15:41786494-41786495
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41784287..41786620-chr15:41827580..41829440,3	K562	blood:
2	chr15:41767730..41772843-chr15:41782564..41789351,11	K562	blood:
3	chr15:41785172..41787151-chr15:41835585..41837884,2	MCF-7	breast:
4	chr15:41784591..41787497-chr15:41813598..41816388,3	K562	blood:
5	chr15:41784244..41787186-chr15:41835793..41838130,2	MCF-7	breast:
6	chr15:41777763..41779575-chr15:41786284..41787961,2	MCF-7	breast:
7	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
8	chr15:41693279..41695491-chr15:41786361..41789615,3	K562	blood:
9	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137815	Chromatin interaction
ENSG00000259838	Chromatin interaction
ENSG00000137806	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000092445	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv904110	chr15:41776692-41813279	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv904111	chr15:41777898-41805115	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv471241	chr15:41783814-41820200	Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv569233	chr15:41784809-41805237	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41785000-41787000	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr15:41785000-41788800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:41785200-41786600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41785200-41786800	Active TSS	Aorta	Aorta
5	chr15:41785200-41786800	Active TSS	Rectal Smooth Muscle	rectum
6	chr15:41785200-41788200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:41785200-41788200	Active TSS	Right Atrium	heart
8	chr15:41785200-41788400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr15:41785200-41788400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:41785200-41788600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr15:41785200-41788600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:41785200-41788600	Active TSS	HepG2	liver
13	chr15:41785200-41789000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:41785400-41786600	Active TSS	Fetal Kidney	kidney
15	chr15:41785400-41786600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:41785400-41786800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr15:41785400-41786800	Active TSS	A549	lung
18	chr15:41785400-41787000	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr15:41785400-41787000	Active TSS	NHDF-Ad	bronchial
20	chr15:41785400-41787200	Active TSS	Brain Substantia Nigra	brain
21	chr15:41785400-41787200	Active TSS	Duodenum Mucosa	Duodenum
22	chr15:41785400-41787200	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr15:41785400-41787200	Active TSS	K562	blood
24	chr15:41785400-41788600	Active TSS	Brain Angular Gyrus	brain
25	chr15:41785400-41789200	Active TSS	Brain Anterior Caudate	brain
26	chr15:41785400-41789400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr15:41785600-41786600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr15:41785600-41786600	Active TSS	Esophagus	oesophagus
29	chr15:41785600-41786800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:41785600-41786800	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr15:41785600-41786800	Active TSS	Fetal Intestine Small	intestine
32	chr15:41785600-41786800	Active TSS	Ovary	ovary
33	chr15:41785600-41787000	Active TSS	Gastric	stomach
34	chr15:41785600-41787000	Active TSS	Hela-S3	cervix
35	chr15:41785600-41788600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr15:41785800-41786600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:41785800-41786800	Active TSS	Left Ventricle	heart
38	chr15:41785800-41786800	Active TSS	Psoas Muscle	Psoas
39	chr15:41785800-41787000	Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr15:41785800-41787000	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr15:41785800-41787000	Active TSS	Small Intestine	intestine
42	chr15:41785800-41787000	Active TSS	HSMM	muscle
43	chr15:41785800-41787200	Active TSS	NHLF	lung
44	chr15:41785800-41788600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
45	chr15:41786000-41786600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
46	chr15:41786000-41787600	Enhancers	Liver	Liver
47	chr15:41786200-41786600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:41786200-41786600	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr15:41786200-41786600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
50	chr15:41786200-41786600	Flanking Active TSS	Pancreas	Pancrea

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