Variant report

Variant	nsv569233
Chromosome Location	chr15:41784809-41805237
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1005)
CpG islands
(count:1957)
Chromatin interactive
region (count:25)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1005 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:41785900-41785935	K562	blood:	n/a	n/a
2	ARID3A	chr15:41788198-41788334	HepG2	liver:	n/a	n/a
3	BACH1	chr15:41793416-41794057	H1-hESC	embryonic stem cell:	n/a	chr15:41793534-41793548
4	BACH1	chr15:41786310-41786408	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr15:41786916-41787199	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr15:41785628-41785847	K562	blood:	n/a	n/a
7	BACH1	chr15:41785538-41785900	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCLAF1	chr15:41787905-41788501	K562	blood:	n/a	chr15:41787931-41787940 chr15:41788427-41788436 chr15:41788171-41788184
9	BHLHE40	chr15:41787995-41788605	K562	blood:	n/a	n/a
10	BHLHE40	chr15:41786440-41786869	K562	blood:	n/a	n/a
11	BHLHE40	chr15:41785568-41786075	GM12878	blood:	n/a	chr15:41786045-41786061
12	BHLHE40	chr15:41786437-41786835	HepG2	liver:	n/a	n/a
13	BHLHE40	chr15:41788136-41788650	HepG2	liver:	n/a	n/a
14	BHLHE40	chr15:41786438-41786596	GM12878	blood:	n/a	n/a
15	BHLHE40	chr15:41804763-41805522	GM12878	blood:	n/a	n/a
16	BHLHE40	chr15:41785522-41785973	HepG2	liver:	n/a	n/a
17	BHLHE40	chr15:41784911-41786088	K562	blood:	n/a	chr15:41786045-41786061
18	BRCA1	chr15:41785387-41785803	Hela-S3	cervix:	n/a	n/a
19	BRCA1	chr15:41800106-41800524	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr15:41786626-41786826	H1-hESC	embryonic stem cell:	n/a	n/a
21	BRCA1	chr15:41786671-41786774	HepG2	liver:	n/a	n/a
22	CBX3	chr15:41785663-41786063	K562	blood:	n/a	n/a
23	CBX3	chr15:41786270-41786977	K562	blood:	n/a	n/a
24	CBX3	chr15:41787906-41788471	K562	blood:	n/a	n/a
25	CCNT2	chr15:41785307-41787256	K562	blood:	n/a	chr15:41785565-41785574 chr15:41785462-41785471 chr15:41787003-41787012
26	CCNT2	chr15:41787466-41788507	K562	blood:	n/a	chr15:41788256-41788265
27	CEBPB	chr15:41800111-41800601	Hela-S3	cervix:	n/a	n/a
28	CEBPD	chr15:41786353-41786941	HepG2	liver:	n/a	n/a
29	CEBPD	chr15:41785725-41786148	HepG2	liver:	n/a	n/a
30	CEBPD	chr15:41785359-41785714	HepG2	liver:	n/a	n/a
31	CEBPD	chr15:41787935-41788193	HepG2	liver:	n/a	n/a
32	CHD1	chr15:41785263-41785463	GM12878	blood:	n/a	n/a
33	CHD1	chr15:41785713-41785789	GM12878	blood:	n/a	n/a
34	CHD1	chr15:41787962-41788092	H1-hESC	embryonic stem cell:	n/a	n/a
35	CHD2	chr15:41786587-41786901	H1-hESC	embryonic stem cell:	n/a	chr15:41786851-41786861
36	CHD2	chr15:41785454-41785998	Hela-S3	cervix:	n/a	n/a
37	CHD2	chr15:41787978-41788502	K562	blood:	n/a	n/a
38	CHD2	chr15:41785432-41785971	GM12878	blood:	n/a	n/a
39	CHD2	chr15:41786406-41786939	HepG2	liver:	n/a	chr15:41786851-41786861
40	CHD2	chr15:41785303-41785900	K562	blood:	n/a	n/a
41	CHD2	chr15:41800070-41800572	Hela-S3	cervix:	n/a	n/a
42	CHD2	chr15:41787961-41788693	HepG2	liver:	n/a	n/a
43	CHD2	chr15:41786555-41787234	K562	blood:	n/a	chr15:41786851-41786861
44	CHD2	chr15:41785756-41785886	HepG2	liver:	n/a	n/a
45	CREB1	chr15:41785676-41786089	A549	lung:	n/a	n/a
46	CTBP2	chr15:41793954-41795564	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTBP2	chr15:41786536-41786979	H1-hESC	embryonic stem cell:	n/a	n/a
48	CTBP2	chr15:41787517-41788800	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTBP2	chr15:41785272-41785976	H1-hESC	embryonic stem cell:	n/a	n/a
50	CTCF	chr15:41799260-41799410	GM12866	blood:	n/a	n/a

(count:1957 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:41785428-41785478	H1-hESC	embryonic stem cell:	embryo
2	chr15:41794293-41794343	HCPEpiC	choroid plexus:	n/a
3	chr15:41804283-41804333	NT2-D1	testis:	n/a
4	chr15:41789894-41789944	HEEpiC	esophagus:	n/a
5	chr15:41794412-41794462	CMK	blood:	n/a
6	chr15:41785428-41785478	H1-hESC	embryonic stem cell:	embryo
7	chr15:41794293-41794343	HCPEpiC	choroid plexus:	n/a
8	chr15:41804283-41804333	NT2-D1	testis:	n/a
9	chr15:41789894-41789944	HEEpiC	esophagus:	n/a
10	chr15:41794412-41794462	CMK	blood:	n/a
11	chr15:41795087-41795137	AG10803	skin:	n/a
12	chr15:41795475-41795525	LNCaP	prostate:	n/a
13	chr15:41803772-41803822	HPAEpiC	pulmonary alveolar:	n/a
14	chr15:41793881-41793931	PrEC	prostate:	n/a
15	chr15:41803850-41803900	T-47D	breast:	n/a
16	chr15:41794293-41794343	H1-hESC	embryonic stem cell:	embryo
17	chr15:41788368-41788418	AoSMC	blood vessel:	n/a
18	chr15:41794293-41794343	BJ	skin:	n/a
19	chr15:41787780-41787830	GM06990	blood:	n/a
20	chr15:41804283-41804333	Hela-S3	cervix:	n/a
21	chr15:41803772-41803822	AG10803	skin:	n/a
22	chr15:41788368-41788418	T-47D	breast:	n/a
23	chr15:41785428-41785478	HRPEpiC	eye:	n/a
24	chr15:41795087-41795137	NB4	blood:	n/a
25	chr15:41793472-41793522	AG09319	gingival:	n/a
26	chr15:41803592-41803642	AG10803	skin:	n/a
27	chr15:41785560-41785610	PrEC	prostate:	n/a
28	chr15:41795087-41795137	HRCEpiC	kidney:	n/a
29	chr15:41787940-41787990	HRE	kidney:	n/a
30	chr15:41794293-41794343	AG04450	lung:	fetal
31	chr15:41803592-41803642	Hela-S3	cervix:	n/a
32	chr15:41786019-41786069	HEEpiC	esophagus:	n/a
33	chr15:41785772-41785822	CMK	blood:	n/a
34	chr15:41793629-41793679	SKMC	muscle:	n/a
35	chr15:41785428-41785478	HIPEpiC	eye:	n/a
36	chr15:41786605-41786655	AG04450	lung:	fetal
37	chr15:41805031-41805081	Hela-S3	cervix:	n/a
38	chr15:41786605-41786655	AG09309	skin:	n/a
39	chr15:41793472-41793522	T-47D	breast:	n/a
40	chr15:41796044-41796094	GM12891	blood:	n/a
41	chr15:41793472-41793522	NT2-D1	testis:	n/a
42	chr15:41787940-41787990	K562	blood:	n/a
43	chr15:41804838-41804888	HRE	kidney:	n/a
44	chr15:41786623-41786673	Hepatocyte	liver:	n/a
45	chr15:41801319-41801369	U87	brain:	n/a
46	chr15:41805031-41805081	HNPCEpiC	eye:	n/a
47	chr15:41796044-41796094	IMR90	lung:	fetal
48	chr15:41804283-41804333	K562	blood:	n/a
49	chr15:41804838-41804888	AG09319	gingival:	n/a
50	chr15:41804283-41804333	NHBE	bronchial:	n/a

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41783642..41785495-chr15:41786905..41788686,2	K562	blood:
2	chr15:41741913..41744692-chr15:41786667..41789132,2	K562	blood:
3	chr15:41784287..41786620-chr15:41827580..41829440,3	K562	blood:
4	chr15:41794324..41796894-chr15:41811831..41813969,3	K562	blood:
5	chr15:41803642..41805353-chr15:41818402..41820685,2	K562	blood:
6	chr15:41757943..41758639-chr15:41799341..41800104,2	K562	blood:
7	chr15:41786578..41789073-chr15:41951782..41954214,2	K562	blood:
8	chr15:41777763..41779575-chr15:41786284..41787961,2	MCF-7	breast:
9	chr15:41757763..41758290-chr15:41799192..41799798,2	MCF-7	breast:
10	chr15:41786611..41788959-chr15:41795033..41798597,3	MCF-7	breast:
11	chr15:41784591..41787497-chr15:41813598..41816388,3	K562	blood:
12	chr15:41789722..41792124-chr15:41838344..41840326,2	K562	blood:
13	chr15:41794716..41797159-chr15:41959395..41960897,2	K562	blood:
14	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
15	chr15:41767730..41772843-chr15:41782564..41789351,11	K562	blood:
16	chr15:41785165..41786030-chr5:90678927..90679709,2	Hela-S3	cervix:
17	chr15:41693279..41695491-chr15:41786361..41789615,3	K562	blood:
18	chr15:41785172..41787151-chr15:41835585..41837884,2	MCF-7	breast:
19	chr15:41801767..41805579-chr15:41951979..41954300,3	K562	blood:
20	chr15:41783642..41785495-chr15:41786905..41788686,2	K562	blood:
21	chr15:41760851..41762536-chr15:41796703..41799672,2	MCF-7	breast:
22	chr15:41786611..41788959-chr15:41795033..41798597,3	MCF-7	breast:
23	chr15:41784244..41787186-chr15:41835793..41838130,2	MCF-7	breast:
24	chr15:41787601..41789591-chr15:41827659..41829404,2	K562	blood:
25	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTK-1	chr15:41787606-41787676	NONHSAT041948
2	lnc-LTK-1	chr15:41788575-41788885	NONHSAT041948

No data

Variant related genes	Relation type
LTK	TF binding region
ITPKA	TF binding region
LTK	CpG island
ITPKA	CpG island
ENSG00000137806	chromatin interactions
ENSG00000259838	chromatin interactions
ENSG00000103932	chromatin interactions
ENSG00000174197	chromatin interactions
ENSG00000137815	chromatin interactions
ENSG00000113369	chromatin interactions
ENSG00000092445	chromatin interactions

Extended variants
information (count: 925 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:925 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12908062	chr15:41784809-41784810	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs565237945	chr15:41784839-41784840	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs557622749	chr15:41784875-41784876	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs570959597	chr15:41784892-41784893	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs536622773	chr15:41784909-41784910	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs557051192	chr15:41784922-41784923	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs573667028	chr15:41784925-41784926	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs141602831	chr15:41784942-41784943	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs375394205	chr15:41784961-41784962	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs573436016	chr15:41784967-41784968	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
11	rs545758451	chr15:41785013-41785014	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs565574881	chr15:41785044-41785045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs575736705	chr15:41785055-41785056	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs532394324	chr15:41785056-41785057	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs544295738	chr15:41785096-41785097	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs561306552	chr15:41785098-41785099	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs189714081	chr15:41785109-41785110	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs547029573	chr15:41785114-41785115	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs559160863	chr15:41785204-41785205	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs529994733	chr15:41785207-41785208	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs551287425	chr15:41785230-41785231	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs367754519	chr15:41785235-41785236	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
23	rs540554758	chr15:41785312-41785313	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs145459060	chr15:41785329-41785330	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs181143093	chr15:41785347-41785348	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs111404506	chr15:41785361-41785362	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs535976084	chr15:41785365-41785366	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs553095728	chr15:41785366-41785367	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs532152628	chr15:41785419-41785420	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs573525840	chr15:41785454-41785455	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs539215081	chr15:41785567-41785568	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs559326811	chr15:41785594-41785595	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs185333504	chr15:41785671-41785672	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs559571457	chr15:41785678-41785679	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
35	rs41277684	chr15:41785690-41785691	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
36	rs561134570	chr15:41785748-41785749	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs574765576	chr15:41785750-41785751	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
38	rs540415774	chr15:41785769-41785770	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs560189528	chr15:41785839-41785840	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs375618889	chr15:41785897-41785898	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs551180821	chr15:41785898-41785899	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
42	rs564713061	chr15:41786075-41786076	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs530720770	chr15:41786104-41786105	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs190590881	chr15:41786173-41786174	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs17852396	chr15:41786210-41786211	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs567192924	chr15:41786245-41786246	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs17855517	chr15:41786337-41786338	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs548638308	chr15:41786350-41786351	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs546746124	chr15:41786448-41786449	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs374059377	chr15:41786494-41786495	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Maculopathy	20981449	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:1528 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41773400-41785000	Weak transcription	A549	lung
2	chr15:41779800-41785200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:41781800-41785000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:41781800-41785000	Enhancers	NHDF-Ad	bronchial
5	chr15:41781800-41785200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:41782200-41785000	Enhancers	HUVEC	blood vessel
7	chr15:41782200-41785200	Enhancers	NH-A	brain
8	chr15:41782400-41785000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:41783400-41785000	Enhancers	Spleen	Spleen
10	chr15:41783400-41785400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:41783600-41785000	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:41783600-41785000	Enhancers	Stomach Mucosa	stomach
13	chr15:41783800-41785200	Enhancers	Pancreas	Pancrea
14	chr15:41784000-41785000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:41784200-41785000	Bivalent Enhancer	Fetal Heart	heart
16	chr15:41784200-41785200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr15:41784400-41785000	Bivalent Enhancer	Fetal Lung	lung
18	chr15:41784400-41785200	Enhancers	Gastric	stomach
19	chr15:41784600-41785000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr15:41784600-41785000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
21	chr15:41784600-41785000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:41784600-41785000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:41784600-41785000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr15:41784600-41785000	Enhancers	Brain Anterior Caudate	brain
25	chr15:41784600-41785000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
26	chr15:41784600-41785000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:41784600-41785000	Bivalent Enhancer	Brain Substantia Nigra	brain
28	chr15:41784600-41785000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr15:41784600-41785000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr15:41784600-41785000	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr15:41784600-41785000	Bivalent Enhancer	Placenta	Placenta
32	chr15:41784600-41785000	Bivalent Enhancer	Fetal Stomach	stomach
33	chr15:41784600-41785000	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
34	chr15:41784600-41785000	Enhancers	Right Atrium	heart
35	chr15:41784600-41785000	Enhancers	HSMM	muscle
36	chr15:41784600-41785200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:41784600-41785200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:41784600-41785200	Enhancers	Left Ventricle	heart
39	chr15:41784600-41785200	Flanking Active TSS	HepG2	liver
40	chr15:41784600-41785400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:41784600-41785400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:41784600-41785400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:41784600-41786000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:41784800-41785000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
45	chr15:41784800-41785000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:41784800-41785000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:41784800-41785000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
48	chr15:41784800-41785000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
49	chr15:41784800-41785000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
50	chr15:41784800-41785000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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