Variant report

Variant	rs575736705
Chromosome Location	chr15:41785055-41785056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr15:41785010-41785072	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:41784933-41789149	HepG2	liver:	n/a	n/a
3	MYC	chr15:41784926-41787164	K562	blood:	n/a	chr15:41787148-41787158 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41785812-41785822
4	USF1	chr15:41784858-41785137	H1-hESC	embryonic stem cell:	n/a	n/a
5	MYBL2	chr15:41785017-41785983	HepG2	liver:	n/a	n/a
6	RCOR1	chr15:41784943-41786126	K562	blood:	n/a	n/a
7	POLR2A	chr15:41784942-41786134	SK-N-MC	brain:	n/a	n/a
8	MAX	chr15:41784994-41785354	H1-hESC	embryonic stem cell:	n/a	n/a
9	USF1	chr15:41784895-41785170	SK-N-SH_RA	brain:	n/a	n/a
10	MAZ	chr15:41784927-41786443	GM12878	blood:	n/a	chr15:41785812-41785822
11	UBTF	chr15:41784963-41788736	K562	blood:	n/a	n/a
12	MAX	chr15:41784891-41788790	K562	blood:	n/a	chr15:41787148-41787158 chr15:41787756-41787766 chr15:41788477-41788486 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41788475-41788485 chr15:41785812-41785822 chr15:41787550-41787560 chr15:41787156-41787165 chr15:41788476-41788483
13	USF1	chr15:41784778-41785130	K562	blood:	n/a	n/a
14	TBP	chr15:41785020-41786144	HepG2	liver:	n/a	n/a
15	MAZ	chr15:41784942-41788504	K562	blood:	n/a	chr15:41787148-41787158 chr15:41787756-41787766 chr15:41788477-41788486 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41788475-41788485 chr15:41785812-41785822 chr15:41787550-41787560 chr15:41787156-41787165 chr15:41788476-41788483
16	RCOR1	chr15:41784984-41785184	GM12878	blood:	n/a	n/a
17	MAX	chr15:41784877-41788854	HepG2	liver:	n/a	chr15:41787148-41787158 chr15:41787756-41787766 chr15:41788477-41788486 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41788475-41788485 chr15:41785812-41785822 chr15:41787550-41787560 chr15:41787156-41787165 chr15:41788476-41788483
18	ESRRA	chr15:41784803-41786660	GM12878	blood:	n/a	chr15:41785466-41785479 chr15:41785470-41785483 chr15:41785471-41785483
19	JUN	chr15:41784825-41786595	K562	blood:	n/a	chr15:41785857-41785871
20	JUND	chr15:41784930-41786090	K562	blood:	n/a	chr15:41785857-41785871
21	POLR2A	chr15:41785043-41786081	U87	brain:	n/a	n/a
22	MAX	chr15:41784997-41786763	ECC-1	luminal epithelium:	n/a	chr15:41785812-41785822
23	BHLHE40	chr15:41784911-41786088	K562	blood:	n/a	chr15:41786045-41786061
24	MYBL2	chr15:41785009-41786109	HepG2	liver:	n/a	n/a
25	MYC	chr15:41784952-41787290	K562	blood:	n/a	chr15:41787148-41787158 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41785812-41785822 chr15:41787156-41787165
26	MAX	chr15:41784857-41787428	HepG2	liver:	n/a	chr15:41787148-41787158 chr15:41787004-41787014 chr15:41787041-41787050 chr15:41785812-41785822 chr15:41787156-41787165
27	TEAD4	chr15:41784867-41786011	K562	blood:	n/a	n/a
28	POLR2A	chr15:41784821-41786193	U87	brain:	n/a	n/a
29	SPI1	chr15:41784918-41785123	K562	blood:	n/a	n/a
30	MTA3	chr15:41784983-41786046	GM12878	blood:	n/a	n/a
31	MAX	chr15:41784894-41786919	HCT-116	colon:	n/a	chr15:41785812-41785822
32	POLR2A	chr15:41784726-41786199	U87	brain:	n/a	n/a
33	MAX	chr15:41784956-41785177	K562	blood:	n/a	n/a
34	USF1	chr15:41784797-41785251	H1-hESC	embryonic stem cell:	n/a	n/a
35	USF1	chr15:41784930-41785172	HepG2	liver:	n/a	n/a
36	MAZ	chr15:41784745-41787140	IMR90	lung:	n/a	chr15:41787004-41787014 chr15:41787041-41787050 chr15:41785812-41785822
37	HEY1	chr15:41785049-41786296	K562	blood:	n/a	chr15:41785795-41785810
38	SIN3A	chr15:41785028-41785939	H1-hESC	embryonic stem cell:	n/a	chr15:41785727-41785740
39	EP300	chr15:41784992-41786030	K562	blood:	n/a	chr15:41785796-41785812
40	USF1	chr15:41784848-41785142	SK-N-SH_RA	brain:	n/a	n/a
41	REST	chr15:41784947-41785107	K562	blood:	n/a	n/a
42	MAX	chr15:41784917-41786787	K562	blood:	n/a	chr15:41785812-41785822
43	MAFK	chr15:41784995-41785542	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:41783642..41785495-chr15:41786905..41788686,2	K562	blood:
2	chr15:41784287..41786620-chr15:41827580..41829440,3	K562	blood:
3	chr15:41767730..41772843-chr15:41782564..41789351,11	K562	blood:
4	chr15:41784591..41787497-chr15:41813598..41816388,3	K562	blood:
5	chr15:41784244..41787186-chr15:41835793..41838130,2	MCF-7	breast:
6	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
7	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:

Variant related genes	Relation type
ITPKA	TF binding region
ENSG00000103932	Chromatin interaction
ENSG00000137815	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000259838	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524476	chr15:41689232-41820200	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv904110	chr15:41776692-41813279	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv904111	chr15:41777898-41805115	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv471241	chr15:41783814-41820200	Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv569233	chr15:41784809-41805237	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41779800-41785200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:41781800-41785200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:41782200-41785200	Enhancers	NH-A	brain
4	chr15:41783400-41785400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:41783800-41785200	Enhancers	Pancreas	Pancrea
6	chr15:41784200-41785200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr15:41784400-41785200	Enhancers	Gastric	stomach
8	chr15:41784600-41785200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:41784600-41785200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:41784600-41785200	Enhancers	Left Ventricle	heart
11	chr15:41784600-41785200	Flanking Active TSS	HepG2	liver
12	chr15:41784600-41785400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:41784600-41785400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:41784600-41785400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr15:41784600-41786000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:41784800-41785200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:41784800-41785200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:41784800-41785200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:41784800-41785200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:41784800-41785200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr15:41784800-41785200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr15:41784800-41785200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
23	chr15:41784800-41785200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
24	chr15:41784800-41785200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
25	chr15:41784800-41785200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:41784800-41785200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:41784800-41785200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr15:41784800-41785200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
29	chr15:41784800-41785200	Enhancers	Liver	Liver
30	chr15:41784800-41785200	Enhancers	Esophagus	oesophagus
31	chr15:41784800-41785200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr15:41784800-41785200	Bivalent Enhancer	Psoas Muscle	Psoas
33	chr15:41784800-41785200	Enhancers	Small Intestine	intestine
34	chr15:41784800-41785400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr15:41784800-41785400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:41784800-41785400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:41784800-41785400	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr15:41784800-41785400	Flanking Active TSS	Colonic Mucosa	Colon
39	chr15:41784800-41785400	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
40	chr15:41784800-41785400	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr15:41784800-41785400	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr15:41784800-41785400	Enhancers	Lung	lung
43	chr15:41784800-41785400	Enhancers	Ovary	ovary
44	chr15:41784800-41785400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:41784800-41785400	Flanking Active TSS	K562	blood
46	chr15:41784800-41785600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
47	chr15:41784800-41785600	Flanking Active TSS	Fetal Intestine Small	intestine
48	chr15:41784800-41785600	Flanking Active TSS	Right Ventricle	heart
49	chr15:41784800-41785600	Flanking Active TSS	Hela-S3	cervix
50	chr15:41784800-41785800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links