Variant report

Variant	rs374065006
Chromosome Location	chr15:82459605-82459606
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr15:82457517-82460234	SK-N-SH	brain:	n/a	n/a
2	EP300	chr15:82457560-82460221	SK-N-SH	brain:	n/a	chr15:82459090-82459104 chr15:82458907-82458916 chr15:82457779-82457793 chr15:82459094-82459108 chr15:82459130-82459138

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82458770..82460757-chr15:82464173..82465930,2	K562	blood:
2	chr15:82449628..82452365-chr15:82458960..82461423,2	MCF-7	breast:

Variant related genes	Relation type
EFTUD1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv977858	chr15:82458762-82463635	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
3	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:82439800-82465600	Weak transcription	K562	blood
6	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
7	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
8	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
9	chr15:82450200-82463400	Weak transcription	Hela-S3	cervix
10	chr15:82451000-82469800	Weak transcription	Psoas Muscle	Psoas
11	chr15:82452200-82463200	Weak transcription	Fetal Heart	heart
12	chr15:82452600-82470600	Weak transcription	Esophagus	oesophagus
13	chr15:82453200-82464000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:82453400-82464600	Weak transcription	NHEK	skin
15	chr15:82455400-82462600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:82455400-82463400	Weak transcription	Right Ventricle	heart
17	chr15:82455400-82464600	Weak transcription	HMEC	breast
18	chr15:82455400-82466600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:82455400-82466800	Weak transcription	Brain Substantia Nigra	brain
20	chr15:82455400-82475200	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:82455400-82475200	Weak transcription	Pancreas	Pancrea
22	chr15:82455600-82460000	Weak transcription	Primary B cells from cord blood	blood
23	chr15:82455600-82463400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr15:82455600-82464600	Weak transcription	Placenta	Placenta
25	chr15:82455600-82469200	Weak transcription	Brain Anterior Caudate	brain
26	chr15:82455600-82475200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:82455800-82464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:82455800-82467200	Weak transcription	Spleen	Spleen
29	chr15:82455800-82469800	Weak transcription	Ovary	ovary
30	chr15:82456000-82463400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:82456000-82469800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:82456000-82475800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:82456000-82475800	Weak transcription	Lung	lung
34	chr15:82456000-82510000	Weak transcription	Thymus	Thymus
35	chr15:82456200-82460200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:82456200-82461200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:82456200-82469000	Weak transcription	Osteobl	bone
38	chr15:82456200-82469600	Weak transcription	HSMMtube	muscle
39	chr15:82456200-82470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:82456200-82475200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:82456200-82475600	Weak transcription	Fetal Brain Female	brain
42	chr15:82456400-82460000	Weak transcription	Fetal Stomach	stomach
43	chr15:82456400-82460800	Weak transcription	Fetal Muscle Trunk	muscle
44	chr15:82456400-82469400	Weak transcription	HSMM	muscle
45	chr15:82456400-82470600	Weak transcription	Left Ventricle	heart
46	chr15:82456400-82473000	Weak transcription	Fetal Intestine Large	intestine
47	chr15:82456400-82474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:82456400-82475200	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:82456400-82475200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:82456400-82475400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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