Variant report

Variant	rs3741386
Chromosome Location	chr11:65124992-65124993
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
2	chr11:65101225..65104158-chr11:65123210..65125603,2	K562	blood:
3	chr11:65123915..65126225-chr16:67902561..67904082,2	K562	blood:
4	chr11:65110991..65113816-chr11:65120865..65125095,4	MCF-7	breast:
5	chr11:65122123..65123729-chr11:65123796..65125400,2	K562	blood:
6	chr11:65122441..65125170-chr11:69458785..69461711,2	MCF-7	breast:
7	chr11:65123264..65125729-chr11:65322609..65324877,2	K562	blood:
8	chr11:65119888..65122132-chr11:65123050..65125503,3	K562	blood:
9	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
10	chr11:65088058..65090877-chr11:65123140..65125273,2	K562	blood:
11	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133884	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000102898	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1858783	1.00[CHB][hapmap]
rs2904966	1.00[CHB][hapmap]
rs2904967	1.00[CHB][hapmap]
rs2904982	1.00[CHB][hapmap]
rs482842	1.00[CHB][hapmap]
rs487989	1.00[CHB][hapmap]
rs503277	1.00[CHB][hapmap]
rs506280	1.00[CHB][hapmap]
rs507005	1.00[CHB][hapmap]
rs509303	1.00[CHB][hapmap]
rs526502	1.00[CHB][hapmap]
rs551523	1.00[CHB][hapmap]
rs554122	1.00[CHB][hapmap]
rs560097	1.00[CHB][hapmap]
rs592050	1.00[CHB][hapmap]
rs611910	1.00[CHB][hapmap]
rs620427	1.00[CHB][hapmap]
rs626555	1.00[CHB][hapmap]
rs626802	1.00[CHB][hapmap]
rs630055	1.00[CHB][hapmap]
rs655433	1.00[CHB][hapmap]
rs667341	1.00[CHB][hapmap]
rs668735	1.00[CHB][hapmap]
rs673147	1.00[CHB][hapmap]
rs676114	1.00[CHB][hapmap]
rs676573	1.00[CHB][hapmap]
rs8638	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
6	nsv541065	chr11:65117387-65271894	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	835 gene(s)	inside rSNPs	diseases
7	nsv482159	chr11:65122282-65125082	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65123200-65125200	Weak transcription	A549	lung
2	chr11:65123400-65131200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:65123400-65143600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:65123600-65125000	Weak transcription	Liver	Liver
5	chr11:65123600-65125200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:65123600-65125200	Enhancers	HepG2	liver
7	chr11:65123600-65125400	Bivalent Enhancer	Fetal Intestine Large	intestine
8	chr11:65123600-65125400	Enhancers	Right Ventricle	heart
9	chr11:65123600-65125600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:65123600-65125600	Weak transcription	Right Atrium	heart
11	chr11:65123600-65127000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:65123600-65143800	Weak transcription	Thymus	Thymus
13	chr11:65123800-65125200	Weak transcription	Lung	lung
14	chr11:65123800-65125400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:65123800-65125600	Weak transcription	Esophagus	oesophagus
16	chr11:65123800-65129200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:65123800-65134200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:65124000-65125200	Weak transcription	Fetal Brain Male	brain
19	chr11:65124000-65129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:65124000-65129000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:65124000-65129200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:65124000-65133800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:65124200-65129600	Weak transcription	Brain Angular Gyrus	brain
24	chr11:65124400-65125800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:65124400-65127800	Enhancers	Fetal Intestine Small	intestine
26	chr11:65124600-65125000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:65124600-65125000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
28	chr11:65124600-65125800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:65124600-65126000	Enhancers	K562	blood
30	chr11:65124600-65127000	Weak transcription	Left Ventricle	heart
31	chr11:65124800-65125000	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr11:65124800-65126800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:65124800-65127000	Weak transcription	Fetal Brain Female	brain

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