Variant report

Variant	rs2904982
Chromosome Location	chr11:65004301-65004302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64937641..64939607-chr11:65002371..65004553,2	K562	blood:
2	chr11:64998225..65000340-chr11:65001571..65004563,3	K562	blood:
3	chr11:64899743..64902690-chr11:65002264..65005486,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162298	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10750761	0.83[ASN][1000 genomes]
rs1195733	1.00[CHB][hapmap]
rs1633466	1.00[CHB][hapmap]
rs1783486	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1858783	1.00[CHB][hapmap]
rs239257	0.81[ASN][1000 genomes]
rs239261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes]
rs2904966	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes]
rs2904967	1.00[CHB][hapmap]
rs2904979	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2904980	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2904981	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2904983	0.85[ASN][1000 genomes]
rs2904984	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2957111	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3015997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs3016001	0.81[ASN][1000 genomes]
rs3741386	1.00[CHB][hapmap]
rs482842	1.00[CHB][hapmap]
rs487397	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs487989	1.00[CHB][hapmap]
rs503277	1.00[CHB][hapmap]
rs506280	1.00[CHB][hapmap]
rs507005	1.00[CHB][hapmap]
rs509303	1.00[CHB][hapmap]
rs526502	1.00[CHB][hapmap]
rs541829	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs542142	0.83[AMR][1000 genomes]
rs551523	1.00[CHB][hapmap]
rs554122	1.00[CHB][hapmap]
rs560097	1.00[CHB][hapmap]
rs592050	1.00[CHB][hapmap]
rs611910	1.00[CHB][hapmap]
rs612392	0.85[CEU][hapmap]
rs620427	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs625427	0.85[ASN][1000 genomes]
rs626555	1.00[CHB][hapmap]
rs626802	1.00[CHB][hapmap]
rs630055	1.00[CHB][hapmap]
rs650056	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs655433	1.00[CHB][hapmap]
rs6591180	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs667341	1.00[CHB][hapmap]
rs668735	1.00[CHB][hapmap]
rs673147	1.00[CHB][hapmap]
rs676114	1.00[CHB][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs676573	1.00[CHB][hapmap]
rs689288	0.85[CEU][hapmap]
rs7111907	0.82[AFR][1000 genomes]
rs7116674	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs8638	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64993600-65011000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:64993800-65010800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:64993800-65010800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:64994200-65007200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:64997800-65009400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:65003400-65004800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:65003600-65004400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:65004000-65004600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:65004000-65004600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:65004000-65004800	Enhancers	Fetal Thymus	thymus
11	chr11:65004000-65009200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:65004200-65004600	Weak transcription	Esophagus	oesophagus
13	chr11:65004200-65005800	Enhancers	HepG2	liver

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