Variant report

Variant	rs6591180
Chromosome Location	chr11:64960147-64960148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64901296..64904246-chr11:64957892..64962148,4	MCF-7	breast:
2	chr11:64959180..64961512-chr11:64966157..64968137,2	MCF-7	breast:
3	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
4	chr11:64958511..64961297-chr11:64972067..64973642,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149809	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000255173	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs239261	0.84[YRI][hapmap]
rs2904966	1.00[YRI][hapmap]
rs2904981	1.00[CHB][hapmap]
rs2904982	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs612392	0.91[YRI][hapmap]
rs620427	1.00[YRI][hapmap]
rs676114	1.00[YRI][hapmap]
rs689288	0.84[YRI][hapmap]
rs7116674	0.89[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64950400-64973200	Weak transcription	Fetal Kidney	kidney
2	chr11:64950600-64992400	Weak transcription	Right Atrium	heart
3	chr11:64951000-64973600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:64951000-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:64951200-64961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:64951200-64962800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:64951200-64963000	Strong transcription	Liver	Liver
8	chr11:64951200-64963000	Strong transcription	Fetal Stomach	stomach
9	chr11:64951200-64963200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:64951200-64963600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:64951200-64968400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:64951200-64976200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:64951400-64963400	Strong transcription	Fetal Muscle Leg	muscle
14	chr11:64951400-64968000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr11:64951400-64979200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:64951600-64976400	Weak transcription	Fetal Brain Male	brain
17	chr11:64951600-64979600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:64951800-64963200	Strong transcription	Fetal Intestine Large	intestine
19	chr11:64951800-64968800	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr11:64951800-64969000	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:64952000-64962200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:64952200-64960200	Strong transcription	Fetal Thymus	thymus
23	chr11:64952200-64960400	Strong transcription	Rectal Smooth Muscle	rectum
24	chr11:64952200-64961600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:64952400-64962800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:64952400-64963000	Strong transcription	Fetal Intestine Small	intestine
27	chr11:64952400-64967400	Strong transcription	Placenta	Placenta
28	chr11:64952400-64972800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:64952400-64980200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:64952400-64992800	Weak transcription	Fetal Heart	heart
31	chr11:64952600-64962400	Strong transcription	NHEK	skin
32	chr11:64952800-64960200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:64952800-64961000	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr11:64952800-64967800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:64952800-64968400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:64952800-64978000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:64953200-64963200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:64953400-64962000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr11:64953400-64964000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:64953600-64967600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:64953600-64971800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:64953600-64978600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:64954000-64960200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr11:64954000-64968200	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:64954200-64968400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:64954400-64961200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:64954600-64973400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:64955000-64962400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:64955200-64973000	Weak transcription	Stomach Mucosa	stomach
50	chr11:64956200-64962400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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