Variant report

Variant	rs3743072
Chromosome Location	chr15:78921762-78921763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1564500	1.00[GIH][hapmap]
rs16969846	1.00[GIH][hapmap]
rs2938673	1.00[GIH][hapmap]
rs3743056	1.00[GIH][hapmap]
rs56218866	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1045827	chr15:78907656-79004642	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv457208	chr15:78908032-79019610	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv570201	chr15:78908032-79019610	Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv570202	chr15:78915245-78953785	Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78915000-78929600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:78918000-78925200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr15:78918600-78933000	Weak transcription	Fetal Kidney	kidney
4	chr15:78918800-78932600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:78919200-78922400	Strong transcription	Fetal Stomach	stomach
6	chr15:78920600-78921800	Genic enhancers	Thymus	Thymus
7	chr15:78920800-78921800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:78921000-78922000	Strong transcription	Fetal Brain Female	brain
9	chr15:78921200-78921800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:78921200-78922000	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr15:78921400-78921800	Enhancers	Gastric	stomach
12	chr15:78921400-78922000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
13	chr15:78921600-78921800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:78921600-78922000	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:78921600-78922000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:78921600-78925200	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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