Variant report

Variant	rs374314246
Chromosome Location	chr10:44789474-44789475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:44789397-44789572	MCF10A-Er-Src	breast:	n/a	chr10:44789525-44789533
2	CEBPB	chr10:44789236-44789628	IMR90	lung:	n/a	n/a
3	STAT3	chr10:44789407-44789567	MCF10A-Er-Src	breast:	n/a	chr10:44789525-44789533
4	POLR2A	chr10:44789239-44789708	U87	brain:	n/a	n/a
5	POLR2A	chr10:44788687-44789713	U87	brain:	n/a	n/a
6	POLR2A	chr10:44789249-44789681	U87	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CXCL12-1	chr10:44789285-44789628	XLOC_008795

Variant related genes	Relation type
ENSG00000229116	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3447098	chr10:44787696-44789544	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422728	chr10:44788646-44792944	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3352463	chr10:44789446-44792444	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44787800-44790800	Enhancers	Fetal Heart	heart
2	chr10:44787800-44791600	Enhancers	Ovary	ovary
3	chr10:44788200-44790400	Weak transcription	Pancreas	Pancrea
4	chr10:44788200-44790600	Weak transcription	Spleen	Spleen
5	chr10:44788200-44791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:44788400-44789800	Enhancers	Fetal Kidney	kidney
7	chr10:44788600-44789800	Enhancers	NHLF	lung
8	chr10:44788600-44791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44788600-44791600	Enhancers	NHDF-Ad	bronchial
10	chr10:44789000-44789800	Bivalent Enhancer	Fetal Stomach	stomach
11	chr10:44789000-44790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:44789000-44790000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:44789000-44790000	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr10:44789000-44790200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr10:44789000-44791400	Enhancers	GM12878-XiMat	blood
16	chr10:44789000-44791600	Enhancers	Right Ventricle	heart
17	chr10:44789200-44789800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:44789200-44789800	Enhancers	Fetal Lung	lung
19	chr10:44789200-44789800	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:44789200-44789800	Enhancers	HepG2	liver
21	chr10:44789200-44789800	Enhancers	NH-A	brain
22	chr10:44789200-44790000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
23	chr10:44789200-44790000	Enhancers	Brain Anterior Caudate	brain
24	chr10:44789200-44790200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr10:44789200-44790200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
26	chr10:44789200-44790200	Enhancers	Colon Smooth Muscle	Colon
27	chr10:44789200-44790200	Enhancers	Right Atrium	heart
28	chr10:44789200-44790400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:44789200-44790400	Weak transcription	Brain Substantia Nigra	brain
30	chr10:44789200-44790400	Weak transcription	Gastric	stomach
31	chr10:44789200-44791000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:44789200-44791000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr10:44789200-44791200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:44789200-44791400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:44789200-44791400	Enhancers	Rectal Smooth Muscle	rectum
36	chr10:44789200-44796600	Weak transcription	Fetal Brain Female	brain
37	chr10:44789400-44789600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:44789400-44789600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:44789400-44789600	Bivalent Enhancer	Fetal Thymus	thymus
40	chr10:44789400-44789600	Active TSS	Stomach Smooth Muscle	stomach
41	chr10:44789400-44789600	Enhancers	Osteobl	bone
42	chr10:44789400-44789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr10:44789400-44789800	Weak transcription	Left Ventricle	heart
44	chr10:44789400-44789800	Weak transcription	Lung	lung
45	chr10:44789400-44790000	Enhancers	Adipose Nuclei	Adipose
46	chr10:44789400-44790000	Bivalent Enhancer	Fetal Intestine Small	intestine
47	chr10:44789400-44791000	Weak transcription	Brain Hippocampus Middle	brain
48	chr10:44789400-44791200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:44789400-44791600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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