Variant report

Variant	rs374339224
Chromosome Location	chr6:63921434-63921435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:63921332-63921449	A549	lung:	n/a	n/a
2	POLR2A	chr6:63921340-63921440	A549	lung:	n/a	n/a
3	POLR2A	chr6:63921346-63921454	A549	lung:	n/a	n/a
4	MYC	chr6:63921406-63921472	MCF-7	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:63921394-63921444	MCF10A-Er-Src	breast:	n/a
2	chr6:63921394-63921444	HCT-116	colon:	n/a
3	chr6:63921394-63921444	AG04450	lung:	fetal
4	chr6:63921394-63921444	HRPEpiC	eye:	n/a
5	chr6:63921394-63921444	T-47D	breast:	n/a
6	chr6:63921394-63921444	CMK	blood:	n/a
7	chr6:63921394-63921444	HepG2	liver:	n/a
8	chr6:63921394-63921444	Hepatocyte	liver:	n/a
9	chr6:63921394-63921444	K562	blood:	n/a
10	chr6:63921394-63921444	ECC-1	luminal epithelium:	n/a
11	chr6:63921394-63921444	HRE	kidney:	n/a
12	chr6:63921394-63921444	SK-N-SH_RA	brain:	n/a
13	chr6:63921394-63921444	MCF-7	breast:	n/a
14	chr6:63921394-63921444	HAEpiC	amniotic membrane:	n/a
15	chr6:63921394-63921444	Hela-S3	cervix:	n/a
16	chr6:63921394-63921444	ProgFib	skin:	n/a
17	chr6:63921394-63921444	HCF	heart:	n/a
18	chr6:63921394-63921444	SK-N-MC	brain:	n/a
19	chr6:63921394-63921444	HPAEpiC	pulmonary alveolar:	n/a
20	chr6:63921394-63921444	PFSK-1	brain:	n/a
21	chr6:63921394-63921444	GM06990	blood:	n/a
22	chr6:63921394-63921444	HEEpiC	esophagus:	n/a
23	chr6:63921394-63921444	HCPEpiC	choroid plexus:	n/a
24	chr6:63921394-63921444	GM12892	blood:	n/a
25	chr6:63921394-63921444	NH-A	brain:	n/a
26	chr6:63921394-63921444	SKMC	muscle:	n/a
27	chr6:63921394-63921444	Caco-2	colon:	n/a
28	chr6:63921394-63921444	NB4	blood:	n/a
29	chr6:63921394-63921444	BE2_C	brain:	n/a
30	chr6:63921394-63921444	AG09309	skin:	n/a
31	chr6:63921394-63921444	AoSMC	blood vessel:	n/a
32	chr6:63921394-63921444	HRCEpiC	kidney:	n/a
33	chr6:63921394-63921444	HNPCEpiC	eye:	n/a
34	chr6:63921394-63921444	NHBE	bronchial:	n/a
35	chr6:63921394-63921444	GM12878	blood:	n/a
36	chr6:63921394-63921444	SAEC	small airway:	n/a
37	chr6:63921394-63921444	ovcar-3	ovarian:	n/a
38	chr6:63921394-63921444	HMEC	breast:	n/a
39	chr6:63921394-63921444	NT2-D1	testis:	n/a
40	chr6:63921394-63921444	PANC-1	pancreas:	n/a
41	chr6:63921394-63921444	SK-N-SH	brain:	n/a
42	chr6:63921394-63921444	HL-60	blood:	n/a
43	chr6:63921394-63921444	HCM	heart:	n/a
44	chr6:63921394-63921444	GM19239	blood:	n/a
45	chr6:63921394-63921444	PrEC	prostate:	n/a
46	chr6:63921394-63921444	AG10803	skin:	n/a
47	chr6:63921394-63921444	AG09319	gingival:	n/a
48	chr6:63921394-63921444	LNCaP	prostate:	n/a
49	chr6:63921394-63921444	BJ	skin:	n/a
50	chr6:63921394-63921444	RPTEC	kidney:	n/a

No data

Variant related genes	Relation type
FKBP1C	TF binding region
FKBP1C	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019831	chr6:63279677-64230736	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1025099	chr6:63514227-64055649	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538270	chr6:63682752-64147241	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2758058	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759434	chr6:63706622-63985889	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830673	chr6:63833563-63939177	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv33308	chr6:63919357-63956379	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv970132	chr6:63920373-63922769	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links