Variant report

Variant	rs3744142
Chromosome Location	chr17:17104303-17104304
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17103497..17105821-chr17:17140669..17142216,2	K562	blood:
2	chr17:17099063..17102775-chr17:17103264..17109484,6	K562	blood:
3	chr17:16943176..16945630-chr17:17102978..17105800,2	K562	blood:
4	chr17:17103562..17107466-chr17:17107503..17109938,5	MCF-7	breast:
5	chr17:17104294..17107636-chr17:17108280..17111234,4	MCF-7	breast:
6	chr17:17091439..17092954-chr17:17102481..17104887,2	K562	blood:

Variant related genes	Relation type
ENSG00000179598	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12601193	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs12601453	0.86[CHB][hapmap]
rs12602196	0.86[CHB][hapmap]
rs12602675	0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap]
rs16961396	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs2292528	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs242247	1.00[GIH][hapmap]
rs3744126	0.86[CHB][hapmap]
rs3744135	0.86[CHB][hapmap]
rs3803762	0.86[CHB][hapmap]
rs4078534	0.86[CHB][hapmap]
rs41319048	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs6502557	0.86[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17076600-17104600	Weak transcription	K562	blood
2	chr17:17086400-17104800	Weak transcription	Brain Substantia Nigra	brain
3	chr17:17086400-17106600	Weak transcription	Colonic Mucosa	Colon
4	chr17:17090200-17107000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:17090200-17107400	Weak transcription	Small Intestine	intestine
6	chr17:17090800-17106600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:17090800-17106600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:17090800-17107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr17:17091200-17104400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:17091800-17107600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:17092200-17105400	Weak transcription	Gastric	stomach
12	chr17:17092400-17105600	Weak transcription	Brain Germinal Matrix	brain
13	chr17:17093000-17104800	Weak transcription	Hela-S3	cervix
14	chr17:17093600-17104400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:17093600-17107400	Weak transcription	Dnd41	blood
16	chr17:17093600-17108400	Weak transcription	Thymus	Thymus
17	chr17:17093800-17105400	Weak transcription	Pancreas	Pancrea
18	chr17:17093800-17105600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:17093800-17105600	Weak transcription	Esophagus	oesophagus
20	chr17:17093800-17107400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr17:17093800-17107600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr17:17094000-17104600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr17:17094000-17107200	Weak transcription	Aorta	Aorta
24	chr17:17094200-17104800	Weak transcription	HepG2	liver
25	chr17:17095000-17104600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr17:17095000-17104800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:17095000-17104800	Weak transcription	Right Ventricle	heart
28	chr17:17095000-17105600	Weak transcription	Right Atrium	heart
29	chr17:17095200-17104600	Weak transcription	Lung	lung
30	chr17:17095200-17104600	Weak transcription	Spleen	Spleen
31	chr17:17095200-17105800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:17095200-17108400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr17:17095400-17104600	Weak transcription	Fetal Brain Female	brain
34	chr17:17095400-17108200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr17:17095600-17104400	Weak transcription	Brain Hippocampus Middle	brain
36	chr17:17095600-17104600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr17:17095600-17104600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr17:17095600-17104600	Weak transcription	Left Ventricle	heart
39	chr17:17095600-17104800	Weak transcription	A549	lung
40	chr17:17095600-17106600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr17:17095600-17107200	Weak transcription	Brain Angular Gyrus	brain
42	chr17:17095600-17107400	Weak transcription	HMEC	breast
43	chr17:17095600-17107600	Weak transcription	Osteobl	bone
44	chr17:17095800-17104600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr17:17096000-17107400	Weak transcription	Fetal Heart	heart
46	chr17:17096200-17107200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr17:17096600-17104600	Weak transcription	Brain Anterior Caudate	brain
48	chr17:17096800-17106000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr17:17096800-17107400	Weak transcription	Primary B cells from cord blood	blood
50	chr17:17098600-17105400	Weak transcription	GM12878-XiMat	blood

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