Variant report

Variant	rs3803762
Chromosome Location	chr17:17086330-17086331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:17086243-17086343	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr17:17085948-17086330	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:17083452..17086510-chr17:17107054..17109094,3	K562	blood:
2	chr17:17086210..17088657-chr17:17181524..17183953,3	K562	blood:
3	chr17:16555519..16558437-chr17:17086043..17087842,2	K562	blood:
4	chr17:17084528..17086994-chr17:17091747..17094642,2	K562	blood:

Variant related genes	Relation type
MPRIP	TF binding region
ENSG00000264765	Chromatin interaction
ENSG00000197566	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12601193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12601424	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12601453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12602196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12602675	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs16961340	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16961396	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2271521	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744124	0.85[CEU][hapmap]
rs3744126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3744142	0.86[CHB][hapmap]
rs3826304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs41319048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4316813	0.92[JPT][hapmap]
rs6502557	1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs6502565	1.00[CEU][hapmap]
rs7222600	1.00[CEU][hapmap]
rs8064771	0.92[JPT][hapmap]
rs8069241	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8072214	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8076621	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17029800-17088400	Strong transcription	Dnd41	blood
2	chr17:17030000-17088000	Strong transcription	Duodenum Mucosa	Duodenum
3	chr17:17030400-17089200	Strong transcription	Fetal Intestine Large	intestine
4	chr17:17038400-17093800	Strong transcription	Fetal Brain Female	brain
5	chr17:17045000-17088400	Strong transcription	Brain Germinal Matrix	brain
6	chr17:17045200-17093800	Strong transcription	Fetal Stomach	stomach
7	chr17:17051000-17093200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:17053200-17088200	Strong transcription	Gastric	stomach
9	chr17:17054800-17087000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:17055200-17089400	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr17:17055600-17092600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr17:17055800-17092600	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr17:17056000-17093600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr17:17056200-17088200	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr17:17056200-17092400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr17:17056600-17093600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr17:17056800-17095000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr17:17059400-17089000	Strong transcription	A549	lung
19	chr17:17060400-17088200	Strong transcription	HSMM	muscle
20	chr17:17060400-17093400	Strong transcription	Liver	Liver
21	chr17:17060600-17088800	Strong transcription	Fetal Intestine Small	intestine
22	chr17:17060600-17089200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:17060800-17089000	Strong transcription	NHLF	lung
24	chr17:17060800-17089400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr17:17060800-17093600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr17:17061400-17089000	Strong transcription	Osteobl	bone
27	chr17:17061400-17090200	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr17:17067800-17092200	Strong transcription	Brain Cingulate Gyrus	brain
29	chr17:17071800-17087800	Strong transcription	NH-A	brain
30	chr17:17073800-17088000	Strong transcription	NHDF-Ad	bronchial
31	chr17:17074000-17088200	Strong transcription	Pancreas	Pancrea
32	chr17:17074000-17088400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr17:17074800-17087600	Strong transcription	HSMMtube	muscle
34	chr17:17075200-17087600	Strong transcription	Colon Smooth Muscle	Colon
35	chr17:17075200-17087800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr17:17075200-17087800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr17:17075200-17088200	Strong transcription	Ovary	ovary
38	chr17:17075200-17089000	Strong transcription	Brain Angular Gyrus	brain
39	chr17:17075400-17086400	Strong transcription	Brain Substantia Nigra	brain
40	chr17:17075400-17086600	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr17:17075400-17087600	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr17:17075600-17087000	Strong transcription	Lung	lung
43	chr17:17076000-17086400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr17:17076000-17087600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr17:17076000-17087800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:17076000-17088000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:17076000-17088600	Strong transcription	NHEK	skin
48	chr17:17076200-17087800	Strong transcription	HMEC	breast
49	chr17:17076200-17089000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:17076200-17092600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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