Variant report

Variant	rs374424902
Chromosome Location	chr16:77227387-77227388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:77227369-77227565	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr16:77223928-77228004	GM12878	blood:	n/a	n/a
3	POLR2A	chr16:77227112-77227965	HepG2	liver:	n/a	n/a
4	POLR2A	chr16:77227245-77227796	K562	blood:	n/a	n/a
5	POLR2A	chr16:77227355-77227936	GM12878	blood:	n/a	n/a
6	POLR2A	chr16:77222637-77230176	K562	blood:	n/a	n/a

Variant related genes	Relation type
MON1B	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869201	chr16:76714549-77233646	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1057677	chr16:76861946-77230013	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1065343	chr16:76927295-77279747	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv542965	chr16:76927295-77279747	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1055234	chr16:77003426-77467286	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv1065048	chr16:77003426-77675163	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv2830376	chr16:77014551-77658185	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	nsv1065149	chr16:77032082-77671890	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
9	nsv1062349	chr16:77039764-77458731	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv542967	chr16:77039764-77458731	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv1056676	chr16:77139682-77854848	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
12	nsv523187	chr16:77227180-77229657	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:77225800-77227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:77225800-77227400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:77225800-77227400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:77225800-77227400	Weak transcription	Aorta	Aorta
5	chr16:77225800-77227400	Enhancers	Spleen	Spleen
6	chr16:77225800-77228000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:77226000-77227400	Enhancers	Small Intestine	intestine
8	chr16:77226000-77228200	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr16:77226200-77227400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr16:77226200-77227400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr16:77226200-77227800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
12	chr16:77226200-77228600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
13	chr16:77226200-77229200	Weak transcription	HSMMtube	muscle
14	chr16:77226200-77233000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr16:77226200-77240400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr16:77226400-77227600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr16:77226400-77228000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr16:77226400-77228000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr16:77226400-77228000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr16:77226400-77228800	Weak transcription	Osteobl	bone
21	chr16:77226400-77229000	Weak transcription	NH-A	brain
22	chr16:77226400-77229600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:77226400-77240200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr16:77226600-77227400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr16:77226600-77227400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:77226600-77227400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:77226600-77227400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr16:77226600-77227400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr16:77226600-77227400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr16:77226600-77227400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr16:77226600-77227400	Weak transcription	Right Atrium	heart
32	chr16:77226600-77227600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr16:77226600-77227600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr16:77226600-77227600	Weak transcription	Fetal Lung	lung
35	chr16:77226600-77227600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
36	chr16:77226600-77227600	Weak transcription	HMEC	breast
37	chr16:77226600-77227600	Genic enhancers	Monocytes-CD14+_RO01746	blood
38	chr16:77226600-77228600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr16:77226600-77228600	Genic enhancers	Pancreas	Pancrea
40	chr16:77226600-77229200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr16:77226600-77229200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr16:77226600-77229200	Strong transcription	NHEK	skin
43	chr16:77226600-77229400	Strong transcription	HSMM	muscle
44	chr16:77226600-77233800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr16:77226600-77233800	Strong transcription	A549	lung
46	chr16:77226600-77234200	Strong transcription	Fetal Muscle Leg	muscle
47	chr16:77226600-77235000	Weak transcription	Psoas Muscle	Psoas
48	chr16:77226600-77235600	Strong transcription	Fetal Thymus	thymus
49	chr16:77226800-77227400	Weak transcription	Adipose Nuclei	Adipose
50	chr16:77226800-77227400	Weak transcription	Brain Anterior Caudate	brain

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