Variant report

Variant	rs374425466
Chromosome Location	chr4:20985579-20985580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr4:20985503-20985971	H1-hESC	embryonic stem cell:	n/a	chr4:20985664-20985673
2	JUND	chr4:20985484-20985838	H1-hESC	embryonic stem cell:	n/a	chr4:20985695-20985704

Variant related genes	Relation type
KCNIP4	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829877	chr4:20847465-20992544	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20984800-20986200	Active TSS	Rectal Smooth Muscle	rectum
2	chr4:20984800-20986400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr4:20985000-20986600	Active TSS	Colon Smooth Muscle	Colon
4	chr4:20985200-20985600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr4:20985200-20985600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr4:20985200-20986000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:20985200-20986200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr4:20985400-20985600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:20985400-20985600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:20985400-20985600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:20985400-20985600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr4:20985400-20985600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr4:20985400-20985600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:20985400-20985600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr4:20985400-20985600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr4:20985400-20985600	Bivalent Enhancer	Fetal Muscle Leg	muscle
17	chr4:20985400-20985600	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
18	chr4:20985400-20985600	Active TSS	Stomach Smooth Muscle	stomach
19	chr4:20985400-20985600	Bivalent/Poised TSS	HUVEC	blood vessel
20	chr4:20985400-20985800	Active TSS	Brain Hippocampus Middle	brain
21	chr4:20985400-20985800	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr4:20985400-20986000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:20985400-20986000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:20985400-20986000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:20985400-20986000	Active TSS	Brain Anterior Caudate	brain
26	chr4:20985400-20986000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
27	chr4:20985400-20986000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr4:20985400-20986000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:20985400-20986200	Active TSS	H9 Cell Line	embryonic stem cell
30	chr4:20985400-20986200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
31	chr4:20985400-20986200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
32	chr4:20985400-20986200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
33	chr4:20985400-20986200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr4:20985400-20986200	Active TSS	Brain Germinal Matrix	brain
35	chr4:20985400-20986200	Active TSS	Fetal Brain Female	brain
36	chr4:20985400-20986200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr4:20985400-20986400	Bivalent Enhancer	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links