Variant report

Variant	rs374578265
Chromosome Location	chr19:21202835-21202836
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv911411	chr19:21184533-21263518	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv578949	chr19:21190572-21244049	ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv960811	chr19:21200306-21371757	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	esv3387197	chr19:21201612-21203810	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
11	esv3407422	chr19:21201712-21203910	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21192200-21203000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr19:21192400-21203000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr19:21192400-21203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:21192600-21203000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:21202800-21203000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr19:21202800-21203000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr19:21202800-21203000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr19:21202800-21203000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr19:21202800-21203000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr19:21202800-21203000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr19:21202800-21203000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr19:21202800-21203000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr19:21202800-21203000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:21202800-21203000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr19:21202800-21203000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr19:21202800-21203000	Enhancers	Fetal Thymus	thymus
17	chr19:21202800-21203000	Enhancers	Thymus	Thymus
18	chr19:21202800-21203000	Active TSS	Dnd41	blood
19	chr19:21202800-21203200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr19:21202800-21204200	Active TSS	Duodenum Mucosa	Duodenum
21	chr19:21202800-21204400	Active TSS	Brain Angular Gyrus	brain
22	chr19:21202800-21204600	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr19:21202800-21204800	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr19:21202800-21204800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr19:21202800-21204800	Active TSS	Stomach Smooth Muscle	stomach

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