Variant report

Variant	rs374608857
Chromosome Location	chr13:30221838-30221839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30214449..30216128-chr13:30220444..30222656,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTUS2-3	chr13:30221772-30221861	NONHSAT032746
2	lnc-MTUS2-3	chr13:30221778-30221861	NONHSAT032747

Extended variants
information (count: 31 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528336	chr13:30194288-30226498	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv980	chr13:30200197-30236915	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv510577	chr13:30213612-30254316	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3422004	chr13:30214852-30223050	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2638055	chr13:30215014-30222317	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv512309	chr13:30215342-30222103	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv995490	chr13:30215547-30222199	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3411541	chr13:30215611-30222201	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv2273790	chr13:30215662-30222034	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv3519856	chr13:30215720-30223264	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv3508496	chr13:30215723-30221953	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv3441325	chr13:30215731-30221953	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv3366780	chr13:30215749-30221899	Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	esv3517955	chr13:30215751-30221909	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv3522108	chr13:30215757-30223218	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv3508519	chr13:30215761-30221917	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv436162	chr13:30215767-30222435	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv3425189	chr13:30215770-30221899	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv3508485	chr13:30215771-30221870	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv3517956	chr13:30215772-30221909	Bivalent/Poised TSS Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv3517954	chr13:30215772-30221937	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv3369449	chr13:30215790-30221869	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv435641	chr13:30215808-30222084	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	esv3508508	chr13:30215810-30221849	Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv3508530	chr13:30215824-30221859	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	esv997258	chr13:30215828-30221848	Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
27	esv3519857	chr13:30215829-30223185	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
28	esv3522119	chr13:30215829-30223185	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	esv1506457	chr13:30215837-30221858	Active TSS Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv498808	chr13:30215837-30228124	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	esv3449679	chr13:30216652-30223050	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30220800-30226800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:30221600-30222000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr13:30221600-30222000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr13:30221600-30222000	Active TSS	Primary T cells from cord blood	blood
5	chr13:30221600-30222200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr13:30221600-30222400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:30221600-30222400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:30221600-30222600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr13:30221600-30222800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr13:30221600-30222800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr13:30221800-30222000	Bivalent/Poised TSS	HUVEC	blood vessel
12	chr13:30221800-30222200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr13:30221800-30222200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr13:30221800-30222200	Active TSS	Fetal Thymus	thymus
15	chr13:30221800-30222400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:30221800-30223000	Active TSS	Primary T cells fromperipheralblood	blood

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